Pseudochaenichthys georgianus (South Georgia icefish): 117461811
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Entry
117461811 CDS
T09629
Symbol
tnn
Name
(RefSeq) tenascin-N
KO
K06252
tenascin
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04510
Focal adhesion
pgeo04512
ECM-receptor interaction
pgeo04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117461811 (tnn)
04518 Integrin signaling
117461811 (tnn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117461811 (tnn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pgeo00536
]
117461811 (tnn)
Glycosaminoglycan binding proteins [BR:
pgeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117461811 (tnn)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Teneurin
EGF_TEN
Fn3_PBP1
Fn3_Dep-1_3rd
FN3_DSCAM-DSCAML_C
EGF_Tenascin
EGF_2
Fn3_Dep-1_2nd
DUF7949
TamB_N
EGF
Motif
Other DBs
NCBI-GeneID:
117461811
NCBI-ProteinID:
XP_033959665
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All DBs
Position
17:24285267..24321697
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AA seq
1120 aa
AA seq
DB search
MTSSLLWRALCLLVMLCTVSHFSSATHHPGPSAPEQGVTFSHVYKIDIPGTSSCKLESLP
AQEETGLQTETTSNGENDITFRHNIRLQTPKCDCEDSESFKSLLYRVNGLEEEVTYLKTA
CTQGCCGGGGAAGVGTSCSGHGTYQPETCSCLCNPGWEGPDCSVSSCPDECNDNGRCVDG
KCVCLQDYTGEDCSQLICPDDCNDKGRCVDGKCVCFPHFTGEDCSVQKCPNDCIGNGQCV
DGQCICEEGFYGEDCSLVLGPQGLRLVQLTDVSLLVEWESVRGAEYYILTYHPKDDESAL
KQVKVPNTENSHLITGLSPGVTYIVQVYAVIKEIQSEADKVEATTDVSTVDGIRVLGQTE
VSIKVDWKNPRSEVDHFRLTHINPAGQEEELNVKRSQEARTKHTIVGLFPGTEYQISVQA
IKGTSEGKPSSVTGATGIDSPTNLVTTEETEDTATVSWDRVQAEIEGYMLSYTSADGSSS
DIPVGRESTSYRLVGLKPGVLHTVYIWAFKGDKVSKKSSTEAETELDAPTNFLARDETES
SFRVSWVHTKAEVDGYMLSYSSSEGLSEEIPVGSERTSYVLTGLRPGVLYTVNIWAIKGS
KSSRKISTQAETDLDAPANLLARDETESSFSVSWDPVQAEIDGYILTYSSSEGSSEEIRV
GSDSSSYRLTGLRPGVLYTVYIWAIKGSKASKKTSTQAQTDLDAPANLLARDETESSFSV
SWDPVQAEVDGYILTYSSSEGSSEEIPVGSDSSSYRLTGLRPGVLYTVYIWAIKGSKASS
KISTKAETDIDAPKDLKATDVSLESALMTWVPPLADIEGYILTYRDEEGNMETVEKQIGA
SESSFALSSLETGKKYIVTIIAYRGSKRSKVVETFFKTVGLVNPFPVDCTQVMKNGNKKS
GIYTLYLNNDRSKPFEGFCDMETDGGGWLVLQRRNTGKLDFMKRWKQCIAGFGNLTEEFW
IGLDKIYELTNTPTQYVLRVELGLGAERAYAVYDDFKIATVKQKFRLTIGKYSGTAGDAM
TYHQGRPWTTIDNDNDIALGNCALAHRGAWWYKNCHLANLNGRWGDSRHSLGVNWEPWKG
HLVSLDFTEMKIRPLGAMSSRKRRSLMAREKSRATNPQKK
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgacttccagtctcctgtggcgggccctgtgcctgctggtgatgctctgcactgtgtca
cacttcagctccgccactcaccaccctggcccctcagctccagagcagggagtcaccttc
agccacgtctataaaattgacatccctgggacttccagttgtaaacttgagagcctgcca
gcccaggaagaaacaggtctgcagactgagaccacttctaatggggagaacgacatcacc
ttcagacacaacatcaggctgcagacaccaaagtgtgactgtgaggattctgaaagcttc
aagtcacttttgtacagagtcaatgggctggaggaagaagtcacctacctaaagaccgcc
tgtacccagggatgttgtggaggtggtggagctgcaggagtgggcacaagctgtagtggg
catggtacctaccaaccggagacctgcagctgcctctgtaacccaggatgggaaggccca
gactgctccgtgtcatcctgccctgacgagtgcaatgacaacggtcgatgtgtggatggg
aagtgtgtgtgccttcaggactacacaggcgaggactgtagccagttgatatgtccagac
gattgcaacgacaaagggcgatgtgtggatggcaaatgtgtgtgtttcccacacttcacc
ggcgaggattgcagtgtccagaagtgtcccaacgactgcattggtaacggccagtgtgtg
gatggccagtgcatctgtgaagaagggttttatggcgaagactgctcattggtcctcggc
cctcagggtctgcggctggtccagctgacagacgtctctctcctggttgagtgggagtca
gttcgcggggcagagtattacattctgacatatcatcccaaagatgatgagagtgccctg
aagcaagttaaggttcccaacacagagaactcccaccttattacagggttgagtcctggg
gtcacttacattgtccaagtttatgccgtcatcaaagaaatccaaagtgaagcagacaag
gtcgaggctaccacagatgtctccactgttgatggtatcagagttcttggccagacagaa
gtctccatcaaggtggactggaagaacccgcgttctgaggtggatcacttcaggctcaca
cacatcaacccagcaggacaggaggaggagctgaacgtcaagaggagccaagaggcgcgc
accaaacacactattgtcggtctgtttccgggaacagagtaccagatatcagtgcaggcc
atcaaaggaacctctgagggaaaaccttcctccgtcacgggagccacaggcattgactct
cctactaacttggtcaccactgaagaaacagaggacacggcaacagtgtcatgggatcgt
gtccaggcagaaatcgagggctacatgttgagctacacctctgctgatggctccagcagc
gacatccctgtaggacgtgagagcacttcgtacaggctggtcggcttgaagcctggagtt
ctccacaccgtctacatctgggccttcaagggagacaaagtcagcaagaagagttcaaca
gaagctgagacagagctggatgcccctactaacttcttggcccgagatgaaactgagtcc
agcttcagggtgtcctgggttcacaccaaggccgaagtcgatggctacatgctaagctac
agctcctctgagggcttgagtgaggaaatccctgtcgggtctgagagaacttcctacgtg
ctgactggcctcagacctggagtcctctacactgtcaacatctgggccatcaaggggagc
aaatccagcaggaagatatctacacaagcggagacagacctggatgctcctgctaacctc
ttagcccgagatgagacagagtccagcttcagcgtgtcatgggatccagtccaggcagaa
attgatggctacatcctcacctacagctcctctgagggctctagtgaggaaatccgagtc
gggtctgacagcagctcttacaggctgactggcctgaggcctggtgtcctctacactgtc
tacatctgggccatcaaggggagcaaagccagcaagaaaacctcaacgcaagctcagaca
gacctggatgctcctgctaacctcttagcccgagatgagacagagtccagcttcagcgtg
tcatgggatccagttcaggcagaagttgatggctacatcctcacctacagctcctctgag
ggctctagtgaggaaatcccagtcgggtctgacagcagctcttacaggctgactggcctg
aggcctggtgtcctctacactgtctacatctgggccatcaaggggagcaaagccagcagc
aagatttcaaccaaagctgagacagacattgatgcccccaaggacctgaaggcaacagat
gtgtcgctggagtctgcccttatgacctgggttcctcctctggctgacattgagggctac
atcctcacctacagagatgaggaaggcaacatggagacggttgaaaagcagattggggcc
agcgagagcagttttgctttatccagtttggagactgggaagaaatacatcgtcaccatc
atcgcctacagggggagcaagaggagcaaggtggtggagaccttcttcaaaacagttggc
ctcgtgaaccccttccctgtggactgcacccaggtcatgaagaatggcaataagaagagt
ggcatatacacgctttaccttaacaacgaccgctccaaaccatttgagggtttctgcgac
atggagactgacggaggcggctggctggtgctgcagcgacgtaacaccggcaagctggac
tttatgaaacgctggaaacagtgcatagccggctttggcaacttgacagaggagttctgg
attggtctggataagatatatgagctcaccaacactccgactcagtatgtgctgagggtt
gaattgggactgggcgcagagagagcctatgctgtgtacgacgactttaagattgcaacg
gtcaagcagaagttcagactcactatcggcaaatacagtgggacagcaggtgacgctatg
acctaccaccaaggccggccctggactactatagataacgataatgacatcgcccttggc
aactgtgccctggcccaccgtggcgcctggtggtacaagaactgtcacctggccaacctc
aacggaagatggggagacagcaggcacagtttgggagtgaactgggagccatggaagggc
cacctggtgtccctggacttcacagagatgaagatccgacctctgggagccatgtccagc
aggaagaggcgatcattgatggccagagagaagagcagagccacaaacccccaaaagaag
taa
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