KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117461972
Entry
117461972         CDS       T09629                                 
Name
(RefSeq) integrin beta-1-like isoform X1
  KO
K05719  integrin beta 1
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03271  Virion - Rotavirus
pgeo04145  Phagocytosis
pgeo04510  Focal adhesion
pgeo04512  ECM-receptor interaction
pgeo04514  Cell adhesion molecule (CAM) interaction
pgeo04517  IgSF CAM signaling
pgeo04518  Integrin signaling
pgeo04530  Tight junction
pgeo04810  Regulation of actin cytoskeleton
pgeo04820  Cytoskeleton in muscle cells
pgeo05100  Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03271 Virion - Rotavirus
    117461972
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117461972
   04514 Cell adhesion molecule (CAM) interaction
    117461972
   04517 IgSF CAM signaling
    117461972
   04518 Integrin signaling
    117461972
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagocytosis
    117461972
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117461972
   04530 Tight junction
    117461972
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117461972
   04810 Regulation of actin cytoskeleton
    117461972
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05100 Bacterial invasion of epithelial cells
    117461972
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pgeo04131]
    117461972
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pgeo04147]
    117461972
   04515 Cell adhesion molecules [BR:pgeo04515]
    117461972
   04090 CD molecules [BR:pgeo04090]
    117461972
Membrane trafficking [BR:pgeo04131]
 Endocytosis
  Phagocytosis
   Integrins (complement receptors)
    117461972
Exosome [BR:pgeo04147]
 Exosomal proteins
  Proteins found in most exosomes
   117461972
Cell adhesion molecules [BR:pgeo04515]
 Integrins
  Integrin beta subunits
   117461972
CD molecules [BR:pgeo04090]
 Proteins
  117461972
SSDB
Motif
Pfam: Integrin_beta Integrin_B_tail Integrin_b_cyt EGF_integrin PSI_integrin I-EGF_1 EGF_2 EGF_Teneurin vWA_SIBA-E
Other DBs
NCBI-GeneID: 117461972
NCBI-ProteinID: XP_033959856
LinkDB
Position
17:complement(37160581..37193458)
AA seq 803 aa
MDLRLLLIAALSAVLSGSWAQQEGSVCIKANAQSCGDCIQVAESCGWCGDENFLTVGESK
SARCDDLESLKKRNCAVTKIENPRGGINIDKDKPVTNRKKDVAEKLKPEQITQIQPQKLT
LTLRSGEPQTFDLKFKRAEDYPIDLYYLMDLSFSMKDDLENVKNLGTDLMREMQGITSDF
RIGFGSFVEKTVMPYISTTPARLINPCTGNQNCTSPFSYKNVLKLTDKGDEFNNLVSQQQ
ISGNLDSPEGGFDAIMQVAVCENQIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGK
CHLENNMYTMSHYYDYPSIAHLVQKLSDHNIQTIFAVTEEFQPVYKELKNLIPKSAVGTL
SSNSSNVIKLIIDAYNSLSSEVILENGRLPEGVTITYKSICKNGVEGTGENGRKCSNISI
GDEVSFKISIESQKCPSNGKPEVIKIKPLGFTEEVEVVLNFICDCQCASEGEPDSDKCYE
GNGIFECGACKCNDGRIGRLCECSKDEVRTEDLDANCRKDNGTDICSNNGDCVCGTCECK
KRENPAEIYSGKYCECDNFNCDRSNNKLCGGHGRCECRKCICDANYTGSACDCSLETATC
LAKNGQICNGRGTCECGICKCTNPKFQGPTCEICPTCPGVCAEHKDCVQCRAFEAGEKKD
TCEHDCSYFQLIKVKDREKMPQPTDQSFPLTHCKERDANDCWFYYTYAIRNDTKEVYVVE
TLECPAGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTQG
NPIYKSPINQFQNPSYGNKGASL
NT seq 2412 nt   +upstreamnt  +downstreamnt
atggatctgcggcttcttttaatagcagcgttatcggcggtcctcagtggcagctgggcg
cagcaagagggaagcgtatgcatcaaagccaacgctcagtcctgtggggactgcatccag
gtcgcagagtcgtgtggatggtgcggagatgaaaacttcctcactgtgggcgagtccaag
tcggcccgctgcgatgatctggagtccctgaagaagagaaattgtgccgtgaccaaaatt
gagaacccacgtggcggcatcaacatcgacaaagacaaaccggtcaccaaccgtaagaag
gacgtggcagagaaactgaagccggagcagatcacccagatccagccgcagaaactcacc
ctcacgctccgatctggtgagccccagaccttcgatctgaaattcaagcgtgcggaggat
taccccatcgacctgtattacctcatggacctctccttctccatgaaggacgatttggaa
aacgtgaagaacctcggcaccgacctcatgagggagatgcaggggatcacctcagatttc
aggattggtttcggctcgtttgtggagaagacggtgatgccttacatcagcaccacgcct
gcccggctcatcaacccctgcacggggaaccagaactgcaccagccccttcagctacaag
aacgtcctgaagctgacggacaaaggagacgagttcaacaacctggtcagtcagcagcag
atctcaggaaacctggactctccggagggcggcttcgacgccatcatgcaggtggccgtc
tgcgagaatcagatcggctggaggaacgtgacccgcctgctggtgttctccaccgacgct
gggttccacttcgccggagacggaaaactgggcggcatcgtcctgcccaacgacgggaag
tgtcacctggagaacaacatgtacaccatgagccactactatgactacccctccatcgcc
catttggtgcagaagctgagcgatcacaacatccagaccatcttcgccgtcaccgaggag
ttccagcccgtctacaaggagctgaagaatctcattcctaaatccgccgtcggcacgctg
tcctccaactccagcaacgtgatcaaactcatcattgatgcttacaattctttgtcgtct
gaggtcattctggaaaatggccgtctgccagaaggagttaccatcacatacaaatccatc
tgcaagaacggtgtggagggaacaggggagaacggcaggaagtgctccaacatctccatc
ggagacgaggtgtctttcaagatttccatcgagtcccagaagtgtccatcgaacggaaag
cctgaggtgattaaaatcaaaccgctgggcttcaccgaggaggtggaggtggttctgaac
ttcatctgcgactgtcagtgcgcctctgagggagagcccgacagcgacaagtgctacgag
ggcaacgggatcttcgagtgcggagcctgcaagtgtaacgacgggcgtatcgggcgtctc
tgcgagtgcagcaaggacgaggtgcggaccgaggatctggatgctaactgtcgaaaggac
aacggtacggacatctgcagcaacaacggagactgtgtctgcggcacatgcgaatgcaag
aagcgagagaaccctgcagagatctacagcgggaagtactgcgagtgcgacaacttcaac
tgcgaccgctccaacaacaagctctgcggaggacacggccgctgtgagtgcaggaagtgc
atctgtgacgccaactacaccggcagcgcctgcgactgctcgctggagacggccacctgc
ctcgccaagaacgggcagatctgtaacggccgcggcacgtgcgagtgtggaatctgcaaa
tgcaccaaccccaagttccagggtcctacctgcgagatctgccccacctgccccggggtc
tgcgccgagcacaaagactgcgtgcagtgccgagcgttcgaggccggagagaagaaggac
acgtgtgagcacgactgcagctacttccagctgatcaaagtgaaggaccgcgagaagatg
ccccagcccaccgaccagagcttccccctgacccactgcaaggagcgcgacgccaacgac
tgctggttctactacacctacgccatcaggaacgacaccaaggaggtctacgtggtggag
acgctggagtgccctgccggccccgacatcatccccatcgtggccggcgtggtggcgggc
atcgtgctgatcggcctcgccctgctgctcatctggaagctgctcatgatcatccacgac
cgccgagagttcgccaagttcgagaaggagaagatgaacgccaagtgggacacgcaagga
aaccccatttacaagagtcctattaaccagttccagaatcccagctacgggaataaaggc
gcttctctttag

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