KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117462032
Entry
117462032         CDS       T09629                                 
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
  KO
K05236  coatomer subunit alpha
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pgeo04131]
    117462032 (copa)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pgeo04147]
    117462032 (copa)
Membrane trafficking [BR:pgeo04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    117462032 (copa)
Exosome [BR:pgeo04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   117462032 (copa)
  Exosomal proteins of bladder cancer cells
   117462032 (copa)
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_CDC20-Fz WDR55 TPR_COPA_B Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_WDR90_POC16_2nd WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_RFWD3 ANAPC4_WD40 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 117462032
NCBI-ProteinID: XP_033959955
LinkDB
Position
17:35272428..35291041
AA seq 1220 aa
MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHDYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETD
VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLTIDPTEYRFK
LALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKVLDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQAALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAEALKESFDP
EKETVPEVDPNAQLLQPSPPINPLDTNWPLLTVSKGFFEGAIAAKGKAGQMAADADMEAP
GGEGWGDDAELQLDEDGFMDAQDGLGEEGVKEEGGGWEVEEDLDLPPELDLPAAGGGAED
GFFVPPTKGMSPTQIWCNNSQLPVDHVLAGSFETAMRLLHDQVGVVSFEAYKPLFMQTLS
RGRTCHLGLPSLPCLRGNPQRNWKDCGAKQGLPAVGLRLSDLIARLQQCYQLTTSGRFEE
AVERFRAILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKDTLDQQKRL
CEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAASFARRLLELGPKPDVAQQTRKI
LAACEKTLTDAHQLNYDPHNPFDLCAASFVPLYRGRPVEKCPLSGACYCPPYKGQICRVT
QVTEIGKDVIGLRVSPLQFR
NT seq 3663 nt   +upstreamnt  +downstreamnt
atgttaaccaaattcgagacgaagtcggcccgtgtcaaaggcctgagtttccatcctaag
aggccatgggttcttgcaagtttgcacaacggagtcatccagctgtgggactatcggatg
tgcacactgattgacaagtttgacgagcatgatggccccgtcagaggaattgacttccac
aaacagcagcctctgtttgtgtctggaggagatgactacaaaattaaggtgtggaactac
aagctgagacgctgcctcttcactctcctcgggcacctggactacatcagaaccactttc
ttccaccatgactacccctggattctgagcgcctcggatgaccagaccattcgcatctgg
aactggcagtccaggacctgcgtctgtgtgctgaccggccataaccactatgtgatgtgc
gcccagttccacccctctgaggacctggtggtgtctgccagtctggatcagaccgtgcga
gtgtgggatatttccggtctgaggaagaagaacctgtctcccggcgctgtggagacggac
gtgcgcggcatctctggtgtcgacttgttcggtgcctcggatgcggttgtcaagcatgtt
ctagagggtcacgaccgtggggtcaactgggctgccttccaccccaccatgcccctcatc
gtgtctggagctgacgacaggcaggtcaagatctggaggatgaatgaatccaaggcctgg
gagctggatacgtgccgcggtcactacaacaacgtgtcctgcgccgtcttccacccgcgc
caggagctcatcctgtccaactccgaggacaagagcatccgggtgtgggacatgtccaag
aggaccggggtgcagaccttccgtcgggaccacgaccgcttctgggtgctgggggctcac
cccaacctcaacctgttcgctgccggtcacgacagcggtatgatcgtgttcaagctggag
cgcgagcgtccggcgtacgctgtgcacggcaacatgctgtactacgtgaaggaccgcttc
ctccgccagctggacttcaacagcagcaaggacactgctgtcatgcagctccgcagtggc
tcgaagttcccggtgttcagcatgtcctacaaccccgcagagaacgctgtcctgctctgc
actagggcgaccaacctggagaacagcacctacgacctctactccattcccaaagagagc
gactctcagaaccccgatgcaccggaggggaagaggtcctctggtctgactgcagtctgg
gtggccaggaacagatttgccgtcctggaccgcatgcactcgctgctgatcaagaacctg
aagaacgagatcgtaaagaaagttcaggtgccgagctgcgaggagatcttctacgccggc
accggctctctgctgctgcgcgatgccgacggcgtcacgctgttcgacgtgcagcagaaa
cgctctctggccaccgttaagatcgccaaggtcaagtacgtggtgtggagcgccgacacc
agccacgtggcgctgctggctaaacacgccatcatgatctgcaaccgtaagctggagagt
ctgtgcaacatccacgagaacatccgagtgaagagtggagcctgggacgagagcggagtc
ttcatctacaccacctccaaccacatcaaatacgctctcacctccggtgatcatggcatc
atccggaccctggatctgcccatctacgtgacccgtgtgagagggaacagtgtttactgc
ctggacagggagtgcaggccgcgcgtcctcaccatcgaccccacagagtaccgcttcaaa
ctggccctggtcaaccgcaaatatgatgaggtgctccacatggtgcgtaacgccaagctg
gtgggtcagtccatcatcgcctacctgcagaagaagggctaccccgaggtggcgctgcac
tttgtcaaagatgagaagacgcgcttcagcctggctctggagtgcggaaacatcgaggtg
gctctggaggcggcgaaggtcctggatgaacgcagctgctgggagcgtctgggcgaagcg
gcgctgctgcagggtcaccaccaggtcgtggagatgtgctaccagaggaccaagaacttc
gacaagctcaccttcctctatctcatcaccggaaacctggccaagctgcgcaagatgatg
aagatcgctgagatcaggaaggacatgagcggtcactaccaggcggcgctctacctgggg
gatgtgagtgagagggtccgcatcctgaagaactgtggacagaagtctctggcttacctg
accgctgccactcacggcctggatgaagaggcggaggcgctgaaggagtcctttgaccca
gaaaaggagacggtgccagaggtcgatcctaatgctcagctgctgcagccgtctccaccc
atcaaccctctggacaccaactggcctctgctcactgtttctaagggcttctttgaggga
gccattgcagctaaggggaaggcaggtcagatggcggctgatgcggacatggaggccccc
gggggcgaaggctggggagacgatgctgagcttcagctggatgaagatggcttcatggat
gcccaggatggcttaggagaggaaggcgtgaaagaggagggaggaggctgggaggtggag
gaagacctggaccttcctccagagctggacctgccggctgcaggcggaggagcagaagac
ggattcttcgtcccaccgaccaagggcatgagtcccacacagatctggtgcaacaactcc
cagctgccagtggaccacgtcctggccggctcgttcgaaactgctatgagattgctccac
gaccaggtaggagttgtgagcttcgaggcctacaagccgctgttcatgcagacgctgtcc
cgaggccgcacctgtcacctggggctgccctcactgccctgcctgcgtggaaacccccag
aggaactggaaggactgtggggcaaagcaaggcctccctgctgtgggcctgcgcctctcc
gacctcatcgcccgcctgcagcagtgctaccagctgaccacctcggggcgctttgaggag
gctgtggagcgcttcagagccatcctgctgtccgttcctctgctggtggttgataacaag
caggagatcgcagaggctcagcaactgatcacaatctgcagagagtacatcgtgggtctg
accatggagaccgagaggaagaagttgcccaaagacaccttggatcagcagaagaggctg
tgtgagatggctgcttacttcacgcactgtaatctccagcctgtgcacatggtgctggtg
ttgcgcacagctctgaatctcttcttcaagctgcgtaacttcaagacggctgccagcttc
gctcgacgcctgctcgagctggggccgaagccagatgttgcacagcagacccgcaagatt
ttggcagcctgtgagaagaccctcacagatgcgcaccagttgaactacgacccccacaat
ccattcgacctgtgcgctgcgtcgttcgtcccgctgtaccgtgggcgtcctgttgagaag
tgccctctgtctggagcctgctactgccccccgtacaaaggccagatctgcagggtcact
caggtgactgagatcggtaaggatgtgatcggtctgcgtgtgagtcctcttcagtttcgt
tga

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