Pseudochaenichthys georgianus (South Georgia icefish): 117462041
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Entry
117462041 CDS
T09629
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03013
Nucleocytoplasmic transport
pgeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117462041
03015 mRNA surveillance pathway
117462041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117462041
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117462041
5.6.2.5 RNA 5'-3' helicase
117462041
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117462041
mRNA cycle factors
Common to processing body (P body) and stress granule
117462041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
AAA_22
UvrD_C_2
AAA_25
Motif
Other DBs
NCBI-GeneID:
117462041
NCBI-ProteinID:
XP_033959979
LinkDB
All DBs
Position
17:19488544..19505627
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AA seq
1113 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEGELLGADTLSSVYDFTDFTLPSQTQGQTQSQLENQVNGPD
DLLQNGEDSVLKAGQLLAELNFEEDEEDAYYTKDLPIHACSYCGIHDPACVVYCNTSKKW
FCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADS
VVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQIN
KLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKES
QTQDSITVKWDLGLNKKRIAYFTIPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVIKV
PDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKMFAVDETSVSGYIYH
KLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA
TVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHN
QTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRAAERELLMNADVICCTCVGAGDP
RLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQS
LFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPD
KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPNQIGIITPYEGQRSYL
VQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL
TRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTI
NPGGRFMSTAMYDAREALIPGSAYDRSNGRSSNMYFQTHDQIGMIGTGPNPMNSLNILNI
PIPFNLVIPPIPPPGYMGQVNGPSAGRGGGMKGKAGGGGGGGNRGGRQRNRGNMGNHSGG
NGGADRHGGHMSGSQASQDLGSQSFSQGPLMQGYINMSQPSQMSQPRLSQPELSQDSYLG
DEFKSQIDVALSQDSTYQGERAYQHSVTGLSQY
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccaagctcgcagactctaacgttcctggacaccgaggag
ggcgagctgctgggagcggacaccctgagctccgtttacgacttcactgacttcaccctg
ccgagccagacccaaggccaaacccagagtcagctggaaaaccaggttaatggccctgat
gacctgctacagaatggagaagactcagtgttaaaagccggtcagctgctggcagagttg
aactttgaggaggatgaggaggatgcatactacaccaaagatcttccaatacatgcctgc
agttactgtggtattcatgatccagcctgtgtggtctactgcaacaccagcaagaagtgg
ttctgtaacggccggggaaacacatccggcagccacattgtaaaccacctggtgagagca
aagtccaaggaggtgaccctgcataaagatggccctctgggggaaactgtgctggagtgc
tacaactgtggctgtcgcaatgtcttcctgttgggcttcatccctgccaaggccgactct
gtggtggtgctactgtgcaggcagccatgtgccagccagagcagcctgaaggacatcaac
tgggacagctcgcagtggcagcctctcatccaggaccgctgcttcctgtcctggctggtg
aagatcccctcggagcaggagcagctcagggcccgtcagatcaccgcccagcagatcaac
aagctggaggagctctggaaggaaaatcccactgcgaccttggaggacctggagaagcct
ggcgtggacgaagagccccaacatgtgctgctccgatatgaggacgcctaccagtatcag
aacatctttggtcctcttgtgaagctggaggccgactatgataagaaactcaaggagtct
cagactcaagacagcataacagtaaaatgggacttgggcttgaataaaaagaggattgct
tatttcactattcccaagacggactcggatatgcgactgatgcagggagatgaaatctgc
ctgaggtacaaaggggatctggcccctccgtggaaaggcatcggacatgtcatcaaagtc
cccgataactatggtgatgagattgccatagagctcaggagcagtgccggcgctccagtg
gagatccctcacaactttcaggtcgactttgtgtggaagtccacttccttcgacaggatg
cagagtgccctgaagatgtttgctgtggacgaaacttcagtgtctggttacatctaccac
aagctgctgggacacgaggtagaggacgtggtgatcaagtgccagctgcccaaacgcttc
actgctcaaggcctgcccgacctcaaccactcacaggtgtacgcagtgaagacggtgctg
cagcgtcctctcagtctgatccagggtcctcctggcacagggaagacggtcacctctgcc
accgtcgtctaccacctggccagacagggcaacgggccagtgctggtgtgtgctcccagc
aacattgcggtcgaccagctgacggagaagatccaccagacgggcctgaaggtggtgagg
ttatgtgccaagagcagggaggccattgactcgcctgtgtccttcctggctctgcacaac
cagacccgcaacatggacagcatgccagaacttcagaagctgcagcagctgaaggacgag
actggagagctgtcgtcctcagacgagaagcgctacagagctctgagacgcgccgccgag
agggaactgcttatgaatgccgatgtgatctgctgcacctgtgttggggcgggggatcct
cgtctggccaaaatgcagttccgctcgatcctgatcgatgagagcacccaggccaccgaa
ccagagtgcatggtgcccgtcgtcctgggcgccaaacagttgattctggtgggtgatcac
tgccagctgggcccggtggtgatgtgtaagaaggcggctaaagccggtctgtcccagtct
ctgtttgagcgtctggtggttttggggatccggccaatccgcctgcaggtccagtaccgc
atgcacccggccctcagcgcctttccatctaacatcttctacgagggctctctgcagaac
ggagtcacggcggcggaccgcgtgaagaaaggctttgacttccagtggccgcagcccgac
aagcccatgttcttctatgtgacccaaggccaggaggaaatagccagctctggaacatcc
tatctcaacaggactgaggcagcgaatgtggaaaaaataaccaccaggttgctgaaggct
ggagccaaacccaatcagatcggcatcattacgccctacgagggtcagaggtcctacctg
gttcagtacatgcagttcagcggctccctccataccaaactctaccaggaggtggagata
gccagtgtggatgcctttcaaggcagagagaaggacttcatcatcctctcctgtgtgagg
gccaatgagcaccagggcatcggcttcctcaatgacccccgacgtctcaacgtggcactc
actagggccaggtatggtgtgattattgtgggaaacccaaaggccctgtcgaagcagcct
ctgtggaaccaccttttgaattactacaaggagcagaaggtcctggtcgaggggcccctg
aacaacctgagggagagcctcatgcaattcagcaagccccgcaagcttgtcaacaccatc
aaccctgggggacgattcatgagcacagccatgtatgatgccagggaggctctcattcct
ggatctgcttatgaccgcagcaacggacgttcatccaatatgtatttccagacccacgac
caaattggtatgatcggcaccggccccaatcccatgaattccctgaacatcctgaacatc
cccatccccttcaaccttgtgatacctcccatccctccacctgggtacatggggcaggtc
aatggaccctcagcaggtcgtggtggaggaatgaaaggcaaggcaggcggtggaggagga
ggcgggaatcgaggtggccgtcaaagaaaccgtggcaacatggggaaccacagcggaggg
aatggaggagcagaccggcatggaggccacatgagtggcagccaggccagccaggacctg
ggctcccagtcgttctcccagggcccactgatgcagggctacatcaacatgagccagccc
tctcagatgagccagcccaggctctcacagcctgaactctctcaggacagttacctagga
gacgagttcaaatcccagattgatgtggcgttgtcccaggactccacctaccagggggag
cgggcctaccaacatagtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
