Pseudochaenichthys georgianus (South Georgia icefish): 117462043
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Entry
117462043 CDS
T09629
Symbol
kcnn1a
Name
(RefSeq) small conductance calcium-activated potassium channel protein 1a isoform X1
KO
K04942
potassium intermediate/small conductance calcium-activated channel subfamily N member 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117462043 (kcnn1a)
Ion channels [BR:
pgeo04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
117462043 (kcnn1a)
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Gene cluster
GFIT
Motif
Pfam:
SK_channel
CaMBD
Ion_trans_2
DUF7310
Ion_trans
Motif
Other DBs
NCBI-GeneID:
117462043
NCBI-ProteinID:
XP_033959984
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All DBs
Position
17:complement(19050395..19131340)
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AA seq
1009 aa
AA seq
DB search
MRHRYAGAVHQHQIPDEKQETSKPSPDPLAPVFNLPPPPSSHHRDRTSTTAVHRQSLQEL
PCLSQPSRRPVHSGDPLPLTSYDTAQRPSHRTIEPSTGQPAHLQQDPWAPAGSQQQLPPP
QSEKQPVSPSCHCSFSEQEASLSQNHHHPADPLPPQPSPPFPPPKLPPPPTSSSSSSFSR
ESKREDRIQRSANNYQQASIVDRCRGGGGAGGHRDHRQLLQQQQQQQQQQQQQQQQQQQQ
HSHLRLQQRDPSPEGSRANSQKGRSLNVCESTEANKRAFESQTPDLQQQQIPQLRAQQQL
LVGSSLPINYCASGSGELCRTHQAPLLQQQEQQQQQQQQQQGALGLCPQRPQHCEQDRNK
SGRITAPGDQAQLHSRATPPVTQQAYAGNSSATGSNSSKDSPNYGSSYHLWPESPHKGEE
RIRIDLHKATTEQKKLSHAGSKSSLSESSGRLPQIAMNTCKYNGGVVRPLVGSLASSSRR
NLAELDSETQPLQTLHSSGLEVVVSKGNGGEDHSKASNESLVREGSVRAGCRATQKKNRD
IGYRLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESSYSFALKCLISL
STVILLGLIIMYHAREIQLFMVDNGADDWRIAMTYERIFFIVLELLVCAIHPIPGHYVFT
WKARLAFTYTPSEADADVDIILSIPMFLRLYLIGRVMLLHSKLFTDASSRSIGALNKINF
NTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITF
LSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLC
KRVKNTAANVLRETWLIYKHTKLVKKIDHAKVRKHQRKFLQAIHQLRSVKMEQRKLNDQA
NTLVDLAKTQNVMYDLVSELQERSEELDKRIGTLEDKLDSVTGSLQALPCLISQAITQQQ
QEFLDGFVHRFRPASLASERSERSERSWTSTARRRRSPSTAPHTSSDSG
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgcggcatcggtacgcgggagctgtccatcagcaccaaatccccgacgaaaagcaagaa
accagcaagccgagcccagacccactcgctcctgttttcaacctcccgcccccgccctct
tctcaccaccgagatcgcacttcgaccaccgccgttcatcgccagagcctccaggagctc
ccctgtctgagccagccctcccggagacctgtgcacagcggcgaccctctacctctgacg
agctacgacaccgcccagcgaccttcacaccgaaccattgaacccagcaccgggcagccg
gcgcacctgcagcaggatccctgggccccggctggctctcagcagcagctgccgccgccg
cagtcggagaagcagcctgtttcccccagctgccactgcagtttttccgagcaggaggcg
agcctttctcaaaatcatcaccatccagccgatcctctcccaccgcagccctccccacct
tttccgccgcctaaactaccaccgccaccaacgtcgtcctcctcctcctccttttcccgg
gaatctaaaagggaggatcgtatccaaaggagtgccaataattaccaacaggcaagcatc
gtggaccgctgcaggggaggaggaggagcaggagggcaccgagaccacaggcagttgttg
cagcagcagcagcagcagcagcaacagcagcagcagcagcagcaacagcaacagcagcag
cacagtcatttaagactccaacagagggacccctcccctgaaggaagccgtgcaaactcg
cagaaagggcgctctttaaatgtatgtgagtcaaccgaggctaacaagagagcattcgag
tctcagactccggacctgcagcagcaacagatcccacaattacgagcgcagcaacagtta
ctggtggggagcagcttgcctatcaactactgcgccagcggctcaggagagctatgtagg
actcaccaggctccactgctgcaacaacaagagcagcagcagcagcagcagcagcagcag
caaggcgcactggggctctgtccccagcgtccgcagcactgtgaacaagaccgcaataag
tctgggaggatcaccgcgccaggcgaccaggcgcagcttcactcccgcgccacccccccg
gtaacgcaacaggcgtacgcggggaactcgtctgcgactggcagcaacagcagcaaagac
agccccaactacggctcgagctatcacctgtggcccgagagcccgcataaaggagaggag
cggatccgcatcgacctccataaggccactactgagcagaagaagctgagccatgctgga
tccaagtcctccctctccgagagcagcggccgactccctcagatagccatgaacacctgc
aagtacaatggcggagtggtgagaccactagtgggcagcctggcgtcctcgtcgcgccgc
aaccttgcggagctcgactcggagacgcagcccttgcagacactgcacagctctggcctg
gaggtggtggtgtccaagggcaacggcggcgaagaccacagcaaggcgtccaacgagagc
ctggtcagggagggcagcgtgcgcgccggatgcagggcaacacagaagaagaacagggac
atcggatacaggctcggccaccggagggcgctgtttgagaagcggaagcggctcagcgac
tacgcactcatcttcgggatgtttgggattgtcgtcatggtgacggagacggagctgtca
tggggggtttacactaaggaatcttcatactcatttgcactgaaatgccttatcagcctt
tccactgttatattgcttggtcttataataatgtaccatgcccgggaaatccagctgttt
atggtcgacaatggtgcggacgattggaggatagccatgacgtatgagcggatcttcttc
atcgtgctggagctgctggtgtgtgccatccatcccatcccgggccattacgtcttcacc
tggaaggcgcggctggccttcacctacacgccgtctgaggccgatgctgacgtagacatc
atcctctccatccccatgttcctgagactctacctgataggcagggtcatgttgctccac
agcaaactgttcacggacgcttcgtctcgcagcattggcgctctcaacaagatcaacttc
aacacacgcttcgtcatgaagaccctcatgaccatctgtccgggaactgttctgctggtg
ttcagtatatcctcctggatcattgcggcatggactgtgcgcgtctgtgagaggtatcat
gacaaacaggaagtgaccagtaacttcctgggagccatgtggctcatctcgattaccttc
ctctccatcggctacggtgacatggtaccacacacgtactgtgggaaaggcgtgtgtctg
cttacagggatcatgggagctggttgcactgcactggtggttgccgtggtagccaggaag
ctggagctgaccaaggctgagaaacacgtccacaacttcatgatggacacacaactctgc
aaacgagtaaagaacacagctgccaatgtactcagggaaacatggctcatctacaaacac
actaagttggtcaagaagatagatcatgccaaggtgcggaaacaccagcgcaagtttctc
caagccattcaccaactgcgcagtgtgaagatggagcaacggaaactcaatgatcaggcc
aacaccttggtggacctcgcaaagacccagaatgtgatgtatgacctggtgtcagagctg
caggagcgcagtgaggagctggacaagcgcatcggcacgttggaggacaagctggactcg
gtgacgggcagcctgcaggctctgccctgcctcatctcccaagccataacccagcagcag
caggaattcctggacggctttgttcaccgctttcggcccgcctcactagcctctgagcgc
tctgagcgctctgagcggtcgtggacttccaccgcccgcaggcggcgctctccctccaca
gcaccacacacatcctctgatagcggataa
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