Pseudochaenichthys georgianus (South Georgia icefish): 117462126
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Entry
117462126 CDS
T09629
Symbol
xrn1
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03008
Ribosome biogenesis in eukaryotes
pgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117462126 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
117462126 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117462126 (xrn1)
03009 Ribosome biogenesis [BR:
pgeo03009
]
117462126 (xrn1)
03016 Transfer RNA biogenesis [BR:
pgeo03016
]
117462126 (xrn1)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117462126 (xrn1)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117462126 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
117462126 (xrn1)
Ribosome biogenesis [BR:
pgeo03009
]
Eukaryotic type
Pre-60S particles
RNases
117462126 (xrn1)
Transfer RNA biogenesis [BR:
pgeo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
117462126 (xrn1)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117462126 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
117462126
NCBI-ProteinID:
XP_033960099
LinkDB
All DBs
Position
17:complement(16452140..16485005)
Genome browser
AA seq
1670 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDKLWQNVNVYLSGHETPGEGEHK
IMEFIRSENRKPSHNPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKNQKRIT
APEETTFHLLHLSLMREYIDYEFSGLRSHLGSKYDLERIIDDWILMGFLVGNDFIPHLPN
LHISHDALPLLYRTYICALPTIGGYLNENGHLNLRNFEKYLEKLAEFDREHFNEVFVDLK
WFESKVANKYLNEAAGKAAEEEAASRDNDKNQDSVSSGRLIGEGKGGDDEEEEDDMFETE
FRQYKRTYYMTKMEVDVVSDDFLANQAKCYVEGIQWILHYYYHGVQSWSWYYPFHYAPFL
SDIRKIAGLKLTFDFGRPFMPFQQLLAVLPAASMELLPESYRHLMSSENSPIIEYYPVDF
KTDLNGKQQEWEAVVLIPFIDERCLLGAMEPYNNKMTKAEKDRNCHTDCAVYSHDSEVDF
PLNSSLPQLFPDIMHCKVRKSNIPMDAWYVPLDHVSRRLDRSALYFCGFPTLQHIKHKFF
KKKSGVMVFQQSSRGENMILEILHTEESEALCDAVSAKVLGKSVFVNWPHLEEARIIAVS
DGDVKFCLEEPPGVQRLYDRPSTPPPSKVNCMSDKEQKDWVKDVQGLTEYFNKRKGIIVN
ETSVVLYGQTLAGRKYVPKANGVVELEKQWAKQVLPFAFQTVVKDIEAFCSSESCFRSLD
ELFPPATNVFMVGNPYYGAMGEVQDSSDVINEGRVRVVFNVPHEPQLEPLIQNQHKYCVK
YSPGYILASRLGITSYLVSRFSGSIFIGRGSKRNPCGEQKANVGLNLKFNKKNEEVPGYT
KKTEKEWLYSNAVEELLAEYLDRFSEVFNLVSRNSHDDVFYEDDIWSGEDHNGAEKVSEI
TSWLKSHPVSSISRSSCDLQVLDSAIVERIEEAAEKAKVKKSTKKVRVTVKPHLLFRPME
QHQGVVPDPDSEYRLFDRIINTREGFSVPLGCRGTIIGIQGAEREAEVLYEVLFDDEFAG
GLNIRTKSPRGYRLPPCALINLTHGVRVDQSCHKLTAIVKPQPAANFNSQRQGSSLNHSP
RSPFTPTQHNSKHGVVKAASQGLGQKQQAKEYNNVWQSLQNSAGPPLQPPAHWHNEGLSQ
QGKNQHANKAAPVGGIRLLKKNEDVNSLFPPQNTANKSTTEFEDLIASLQISKGNQQTLP
PPAPQQVTTSQSDGPLSPQSFAMKGTLMLKEMLKIDSAGTGSPPPQEAAGGQQQNRRRSN
KKLAANMTSPHSDGPVLPPPNLSNAVLNSKVSELACICVGLGMAPPDFSFISNRQTVVCQ
VKLSNGLMVHGPQCQSENDAKEKAAFFALQRLNSLGSGFPLPPALFPGVGQIRPPPLGMN
PVFSQQGGMLLPPQGFGPGPLWGMPLPPPHHPNQQFFGAPGPFPGAPRPQNPASMPIGSH
NQFVPLQVTKKRVSANKKNQDTREFYSAAHTVTRNQSQKPQNQPFGNQLAQCEPQGVNVG
QVADPVSTTTAVPHTPPRQNVPATGHTPSSSSKKKHRKLAVNFEAAKVSE
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgaaattttaccgatggatttcagagcgatatccctgcctcagtgaagtt
gtcaaggaacatcagattccagagtttgacaatctctatctggatatgaatgggattatc
caccaatgttcccacccgaacgatgaggatgtccactttcgcatttccgaggagaagatt
tttgccgacatcttccattacctggaggtgctgttcaggatcatcaagccccgcaaggtg
ttcttcatggcggtggacggcgtggcaccaagggcgaagatgaaccagcaaagaggacgg
agattcaggtctgccaaagaagcagaggacaagataaaaaaagcactggaaaagggagag
gtgcttcccacagaggctcgcttcgactccaactgtatcactcctggcactgacttcatg
gccagactccaggagcagctcaagtattttgtccacaacaagctgtccaccgacaagctg
tggcagaacgtcaacgtctacctgtcgggtcacgagactccaggcgagggcgagcataag
atcatggagtttattcgctctgagaacagaaagccaagtcacaaccccaacacccgacac
tgcctgtacggcctggatgctgacctgatcatgttgggtttgaccagccacgagcccaac
ttctccctgctcagagaagaggtccgctttggaggaaagaaaaaccagaaaaggataacg
gctccagaggagactacctttcatttgcttcacttgtctctgatgagggaatacatcgat
tatgagttttctgggctcaggagtcacctcggttctaagtatgacctggagcgaataata
gacgactggattctaatgggcttcctagtggggaacgatttcatcccccacctcccaaat
cttcacatcagtcatgatgctttgccactgctatacaggacctacatctgtgctctgccc
accatagggggctatctcaatgagaacggccatctgaacctccgaaactttgagaaatac
ttggagaagctcgctgagttcgatcgagagcatttcaatgaggtcttcgtggacttgaag
tggtttgagagtaaagttgctaacaagtatctgaacgaggcggccggtaaggcagcagaa
gaggaagccgccagcagagacaacgacaagaatcaggattctgtctcatccggaaggttg
atcggagaaggaaagggaggcgacgatgaggaagaggaggatgatatgtttgaaacagag
ttcagacagtacaagcgcacgtactatatgaccaagatggaagtggatgtggtgtcagat
gatttcctggccaaccaggctaagtgttatgtggaaggtatccagtggattcttcactac
tattaccacggggttcagtcctggagctggtactaccccttccactacgctcccttcctg
tcggacatcaggaagatagccgggttgaagttgacctttgactttgggagacccttcatg
cccttccagcaactgctggccgtcctgcctgctgccagcatggagctgctgcctgagagt
tacaggcacctgatgagcagtgaaaactcgcccatcattgagtactaccctgttgacttc
aaaacggatctcaacggcaagcagcaggagtgggaggctgtggttctgatccccttcata
gatgagaggtgcttactgggcgccatggagccctataacaacaagatgaccaaagcggag
aaggacaggaactgtcacacagattgtgccgtttactcgcacgactctgaggtcgacttc
cccttaaactccagcctgccgcagctgttccccgacatcatgcactgcaaagtcaggaaa
tcaaacatccctatggatgcttggtatgttcctctggaccacgtcagcagacgcctcgac
cgctcagctctgtacttctgcggcttccccaccctgcaacacatcaaacacaagtttttc
aagaagaagagtggagtgatggtgttccagcagagcagccgaggggagaacatgatactg
gagatccttcacaccgaggaaagcgaggcgttatgtgatgctgtatctgcaaaggttctt
gggaagtctgtgtttgtcaactggccgcatctagaggaagcacgcatcatcgcagtgtca
gatggagacgtcaagttctgtctagaggaaccgcctggtgtccagagactgtacgacagg
ccctccaccccccccccctctaaagtcaactgcatgtctgacaaggagcagaaggactgg
gtgaaggacgtgcagggactcactgaatatttcaataagaggaaaggcatcatagtgaac
gagacatcggtggttttgtacggccagacgctggcgggaaggaaatacgtccccaaagcc
aacggggtggtggagctggagaagcagtgggccaagcaggtcctccccttcgccttccag
accgtggttaaggacatcgaggccttttgctcgtctgagagctgcttcaggagcctagac
gagcttttccctccagcaacgaatgtcttcatggtggggaacccttactacggagccatg
ggcgaggtgcaggactctagtgatgtcatcaacgaaggccgtgtacgagtggtcttcaac
gtgccgcacgaaccacagctggagcccttaatacagaatcagcataagtactgtgtgaag
tacagtcccggatacattctggcttctcgtctcggcatcaccagctacctcgtctcccgc
ttctcgggaagcatcttcattggccgaggctctaagaggaatccctgtggcgagcagaaa
gctaacgttggcctgaacctgaagttcaacaagaagaacgaggaggttcctgggtacacc
aagaagacggagaaggagtggctctactctaatgctgtggaggaactgctggccgaatac
ctggacagattttctgaggtattcaacttggtgtccaggaacagtcatgatgacgttttc
tatgaagacgacatctggtctggagaggaccacaatggggcggagaaggtctctgaaatc
acctcatggctgaaaagtcacccagtgagctccatcagcaggtcgtcatgtgacctgcag
gtgctggactcggccatcgtggagaggatcgaggaggcggcggagaaagccaaggtgaag
aagagcaccaagaaagtcagagtgacagtcaagcctcatctgctcttcaggcccatggag
caacaccagggtgtggtgccggaccctgactcagagtaccgcctgtttgaccgcatcatc
aacaccagggagggcttctccgtccccctgggatgcagagggaccatcatcggcattcaa
ggagcggagcgtgaggccgaggttctctacgaggtgctttttgacgatgaatttgctgga
ggtctcaacatcaggactaagtctccccgtggttaccgtctccccccctgcgccctcatc
aacctcacccacggagtgagggtggatcaaagctgccacaagctcactgccatcgtcaaa
cctcagcccgccgccaacttcaactcccaacgccaggggtccagcctcaaccactccccc
cgatcccccttcacccccacacagcataacagtaaacacggcgtggtgaaagcagcctcc
caaggtctcgggcagaaacaacaggccaaggagtacaacaatgtgtggcagtctctgcag
aactctgctggccctcctctccaacctcctgctcactggcacaatgaaggacttagccaa
caggggaagaaccagcacgctaacaaagctgccccagttggtggcatcagactgttgaag
aaaaatgaagacgtcaactcccttttccccccccagaacacagccaataagtctaccact
gagttcgaggacctgatagccagcctgcagatctccaagggcaaccagcaaactctaccg
cctcctgctccccaacaagtaaccaccagccaatcagatggcccgctgtcccctcagtcc
tttgcaatgaagggaaccctgatgctgaaggagatgctgaagattgacagcgctggaaca
ggaagtcccccccctcaggaggccgccgggggccagcagcagaacaggagacggtccaac
aagaaactggcagccaatatgacctccccccacagtgacggccctgttttaccccctcca
aatctctccaacgccgttctgaacagtaaggtgtcggagctggcgtgcatctgtgtgggg
ttagggatggccccgcccgatttcagcttcataagcaacagacagactgtagtgtgtcag
gtgaagctgtccaatgggctcatggttcacggtccccagtgccaatcagaaaatgatgcc
aaggaaaaagctgccttctttgccctccagagactgaactctttggggtcgggcttcccc
ctcccacctgctctcttcccaggagtgggtcagatacgacccccacccttaggcatgaac
cccgtcttcagccaacaaggcggtatgctactgcctccccagggcttcggccccggcccc
ctctgggggatgccgctgccccccccccaccacccgaaccagcagttcttcggagcgcca
ggacccttccctggggccccccgcccccagaaccctgcatcaatgcccatcggctcacac
aaccagtttgttccgctgcaggtgaccaagaagcgagtctccgccaacaagaagaaccag
gacactcgggagttttacagcgccgcccacactgtgaccaggaaccaatcacagaaaccc
cagaaccagcccttcggcaatcagctcgctcaatgcgaaccccagggcgttaacgtcggc
caagtagcagaccccgtctccacgacaacagcagtcccacacacccctcctcgacaaaac
gtcccggcaacaggccacacccccagctcctcctccaagaagaagcacaggaaactggca
gtcaactttgaggcggcgaaagtgtccgagtga
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