Pseudochaenichthys georgianus (South Georgia icefish): 117462182
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Entry
117462182 CDS
T09629
Symbol
vps35
Name
(RefSeq) vacuolar protein sorting-associated protein 35
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117462182 (vps35)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117462182 (vps35)
Membrane trafficking [BR:
pgeo04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
117462182 (vps35)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FerA
Motif
Other DBs
NCBI-GeneID:
117462182
NCBI-ProteinID:
XP_033960171
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All DBs
Position
3:3169737..3191239
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AA seq
797 aa
AA seq
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MPTSQSPQDEQEKLLDEAVQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPK
SYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVRS
FPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDDGEQPEGTEEMTGDINDS
IDFVLLNFAEMNKLWVRMQHQGHSRDREKREKERQELRILVGTNLVRLSQLEGVNVDKYK
QIVLSGVLEQVVNCRDSLAQEYLMECIIQVFPDEFHLQTLNPFLRSCADLHQHVNVKNII
IALIDRLALFAHREDGPGIPAEIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAM
KCYPDRVDYVDKVLESTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYSNVLTVLQLK
HFPPLFEYFDFESRKSMSCYVLSNTLDFNTTILAQEQVDAILSLASTLIQDQPDQPADDP
DPEDFAEEQSLVGRFIHLLKSEDPDQQYLILNTARKHFGAGGNLRIRYTLPPLVFAAYQL
AFRYKENSSSDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENH
ETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMRCFSEENHEPLRTQCALAASK
LLKKPDQCRAVSICAHLFWSGRSTEKNGEEIRDGKRVMECLKKALKIANQCMDPSLQVQL
FIEILNRYVCFYERENDAVTVQVLNQLIQKIREDLPNLEASEETEQINKHFQNTLEHLRL
QRESPEAEGPAYEGLVL
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgcccacctcgcagtctccccaggacgaacaggagaagcttctggatgaagcggtgcag
gctgtgaaggtccagtccttccagatgaagcgatgcctggacaagaacaagctgatggac
gccctgaagcacgcctccaacatgctgggggagctccggacctccatgctgtctccaaag
agctactatgagctctacatggccatctctgatgaactgcactacctggaagtgtatctg
actgatgagtttgccaaaggacgcaaggtggcagacctgtatgagctggtgcagtacgca
ggcaacatcatccccagactctacctgctcatcaccgtgggggtggtgtacgtgcgctcc
ttccctcagtcccgtaaggacatcctgaaggacctggtggagatgtgtcggggggtccag
caccctctcaggggcctcttcctcaggaactacctgctgcagtgcacccgcaacatcctg
cccgacgacggagagcagccagagggaacagaggagatgaccggtgacatcaacgactcc
atcgactttgtcctgctcaactttgcggagatgaacaagctgtgggtgaggatgcagcac
cagggacacagccgggaccgagagaagagggagaaggagcgccaggagctgaggatcctg
gtgggaaccaacctggtgcgcctcagccagctggagggggtcaacgtggacaagtacaaa
cagattgttctctcgggggtgctggagcaggtggtgaactgcagagactctctggctcag
gagtacctcatggagtgcatcattcaggtgttcccagacgagttccaccttcagaccctg
aaccccttcctgcgctcctgtgctgatctccaccaacacgtcaacgtgaagaacatcatc
atcgccctcatcgacagactggctctgttcgctcatcgagaagacgggcccggcattcca
gctgagatcaaactgttcgacatcttctctcaacaagtagccaccgtcattcaatctcgc
caggacatgccctcagaggacgtggtctctctgcaggtttctctcatcaacctggccatg
aagtgctacccagaccgcgtggactacgtggacaaagtcctggagagtactgtggagatc
ttcaacaagctcaacctggaacacatagcgacgagcagcgccgtgtccaaggagctgacc
cgcctgctgaagatcccggtggacacctacagcaacgtcctgacggtgctgcagctcaaa
cacttccctccgctcttcgagtacttcgacttcgagtcacgcaagagcatgagctgctac
gtgctgagcaacacgctggacttcaacaccaccatcctggcccaggagcaggtggacgcc
atcctgtccctggcatccacactgatccaggaccagccggaccaacccgctgatgaccct
gacccagaggactttgctgaggagcaaagcctcgtgggacgcttcatccacctgctcaaa
tctgaggatccggatcaacagtacctgatcctgaacacagcccggaaacactttggggcg
ggggggaacctgcggatccgctacacactgccccccctggtgttcgccgcctaccagctg
gccttcagatacaaggagaactcctcatcggatgacaagtgggagaagaagtgtcagaag
atcttctccttcgcccatcagaccatcagtgctcttatcaaggcggagctggcggagctg
cctctgcgcctcttcctgcagggggcgctggccgcgggggagatcggctttgagaaccac
gagactgtagcttatgagttcatgtcccaggccttctctctgtacgaggatgagatcagt
gactccaaggcgcagctggcagccatcacgctgatcatcgggacctttgagcggatgcgg
tgtttcagcgaggagaaccacgagcctctgaggactcagtgtgcgctcgctgcctccaaa
ctgctgaagaagcccgaccagtgccgggccgtcagcatctgcgctcacctcttctggtcc
ggacgcagcaccgagaagaacggggaggagatccgcgacggtaagcgtgtgatggagtgc
ctaaagaaagccctgaagattgccaaccagtgtatggacccctcgctgcaggtccagctc
ttcattgaaatcctcaacagatacgtctgcttctatgagcgggaaaacgatgcggtcact
gtccaggtattaaaccagctcatccagaagatcagggaagatctgcccaacctggaggcc
agcgaggagacggagcagatcaacaaacacttccaaaacacactggagcacctgcgactg
cagagggagtccccggaggccgaggggcccgcctatgagggcctggtgctttaa
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