Pseudochaenichthys georgianus (South Georgia icefish): 117462622
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Entry
117462622 CDS
T09629
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03030
DNA replication
pgeo03410
Base excision repair
pgeo03420
Nucleotide excision repair
pgeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117462622 (lig1)
03410 Base excision repair
117462622 (lig1)
03420 Nucleotide excision repair
117462622 (lig1)
03430 Mismatch repair
117462622 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgeo03032
]
117462622 (lig1)
03400 DNA repair and recombination proteins [BR:
pgeo03400
]
117462622 (lig1)
Enzymes [BR:
pgeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117462622 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
117462622 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
117462622 (lig1)
DNA replication proteins [BR:
pgeo03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
117462622 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
117462622 (lig1)
DNA repair and recombination proteins [BR:
pgeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
117462622 (lig1)
NER (nucleotide excision repair)
Other NER factors
117462622 (lig1)
MMR (mismatch excision repair)
Other MMR factors
117462622 (lig1)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
117462622
NCBI-ProteinID:
XP_033960785
LinkDB
All DBs
Position
17:complement(35996464..36095510)
Genome browser
AA seq
1033 aa
AA seq
DB search
MQRSIASFFQPKGKDVQKKTSNEAVKKPSKSPLKVQNGVQEADSRVKKLVKRSRQILDSD
DDDEEAPVVKEPAATIGDKEAPAKPEKKDDVFKAVPTPMSPPPAPATSKTPATPTTPVTP
MTPVTPATSTSPGTPSTPNSISPSGLVKRKTARKMFPKRKLDESGSESPKDESEAKEEPR
QKHKRPRVESPGNTDEPMEEEAKEVRVEKAVTEATSPDEEVEEKKEGVEKAVEEEKEEVE
KAVEKKKDEVEKAEEKKKDEVEKAVEEKKEEVEKAVEKKKDEVEKAVEEKKEEVEKAVEE
KKEEVEKAVEEEKEEKAEAAEMKTEAKEKKDDEKVAKKKKKEKVVEKDTQEAEKSPESQT
PRKQKETKEQKDKEPPKKSPISSFFAPRKAAVKTEKSKKSEGEKQTSPERKVSAEESKDV
KGESTSGPTDYNPARPNYHPVEHACWKQGQKVPYLAVARTFEKIEEESGRLRNIETLSNL
LRSVLLLSPDDLLCCVYLCLNQLGPAYLGLELGVGETVLMKAVAQATGRQLDKIKADAQE
KGDLGLVAESSRSNQRIMFQPASLTAGGVFRKLKEIGSMSGNSAMNKKIDIIKGLFVACR
FSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAW
IESKSLILKQTYCEMPNYDILIPVLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVM
KRFDEAAFTCEYKYDGERAQIHILENGEVRVFSRNQEDNTTKYPDIISRIPKVKKDSVVS
CVLDAEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPL
CRRRALLRESFSEVEGEFVFARYIDSDNTDSIAEFLEQSVRDSCEGLMVKTLEKDATYEI
AKRSHNWLKLKKDYLDGVGDTMDLCVIGAYLGKGKRAGAYGGFLLACYDEENEEFQSVCK
IGTGFKDEDLEQHFNFLKVDPVKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQI
QNQGEKGDLEDYY
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggagcatcgcatccttctttcagcccaagggcaaagatgttcagaagaaaacc
tcaaatgaagcggtgaaaaaaccttccaaaagtcctctgaaggtgcagaacggcgtccag
gaagcggattcacgcgtgaagaagcttgtgaaacgcagccgtcagatcctggacagcgac
gacgacgatgaagaagctccggttgttaaagagccagctgctaccatcggagacaaagaa
gctccggctaaaccagaaaagaaggacgatgtcttcaaggccgttcccacccccatgtct
cctccacctgccccggccacctctaagacaccagccacccccacgacccctgtgacccct
atgacccctgtgaccccggctacttctacttcacctgggacccccagcaccccgaactcc
atctccccttctgggctcgttaaacgcaaaactgcgaggaagatgttccccaagaggaag
ctggatgagagcggcagtgagagcccgaaagacgagtcggaggccaaggaggagccgcgt
cagaaacacaagcgaccccgtgtggagagtccagggaacaccgatgaacccatggaggag
gaagcaaaagaagtacgagttgaaaaggcggtgaccgaggctacgagcccagatgaggag
gtggaggagaagaaagagggagtagaaaaggctgtggaggaggagaaagaggaagttgaa
aaggccgtggagaagaagaaagatgaagtagaaaaggccgaggagaagaagaaagatgaa
gtagaaaaggccgtggaggagaagaaagaggaagtagaaaaggccgtggagaagaagaaa
gatgaagtagaaaaggccgtggaggagaagaaagaggaagtagaaaaggccgtggaggag
aagaaagaggaagtagaaaaggccgtggaggaggagaaagaagagaaagctgaggcggcg
gaaatgaaaactgaagcaaaggagaagaaggatgatgagaaagttgccaagaagaagaag
aaggagaaggtggttgaaaaggacacgcaagaggcagaaaagagcccggaaagtcaaaca
ccgagaaagcagaaagaaacaaaagagcagaaagataaggagccgcccaaaaaatccccc
atcagcagtttctttgctccaagaaaagccgcagtaaagacggagaaatcgaagaagagc
gaaggagagaaacagacgagtccagagaggaaggtttcagcggaggagagcaaagacgtc
aaaggggagtcaacctcaggaccaacggactacaatccggcccgaccgaactaccatcct
gtggagcacgcctgctggaagcaaggccagaaagtgccgtacttggcggtggctcgcacc
tttgagaagattgaagaggagtctggcagactgaggaacatcgagacgctgtcgaacctg
ctccgctccgttctgctgctttctccagacgacctgttgtgctgcgtgtacctgtgtctg
aaccagctggggcccgcctacctggggctggagctcggtgttggagagacggtgctgatg
aaagctgtcgctcaagccactgggcgacaattggacaaaatcaaggcagatgcgcaggag
aaaggagatctgggtcttgtggccgagagttcccgtagcaaccagcgcataatgttccag
ccggccagtctgacggcagggggcgtgttcaggaaattgaaggaaatcggcagcatgagt
gggaactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgt
ttttccgaggcgcgctacatcgtcaggtccctggctgggaagctgaggatcggcctggct
gagcagagcgtcctatcagcactgagccaggctgtgtgcctcaccccccctggacaaggt
ttccctcccgccgtgatcgatgcagggaaggggatgagcgctgagagcaggcgggcctgg
atcgaatcgaagagtctcattctcaaacagacttactgcgagatgcccaattacgacatc
ctaatccccgtcctgctcaaagaaggcatcgatgagctacccaatcactgcaagctcact
ccaggtgtgcctctgcgacccatgttggctcaccccaccaagggcgtcggcgaggtgatg
aagaggtttgacgaggcggcgtttacctgcgagtacaaatacgacggagagcgcgctcag
atacacattctggagaacggagaggtgcgagtgttcagccgcaaccaggaagacaacacc
accaagtacccagatatcatctctcgcattcccaaggtgaagaaggactctgtggtgtcc
tgcgtcctggacgcggaggcggtggcctgggatcgagagaagaagcagatccagcccttc
caggtcctcaccacccgaaagagaaaggacgtggacgcttcggagatcaaagtgcaagtg
tgtgtgtacgccttcgacctcctctatctcaacggagagtccctggtgcggcagccgctg
tgtcggcgtcgggctttgctgagggaaagcttctcggaggtggagggagagtttgtgttc
gcccgatacatcgactccgacaacaccgactccatcgcagagttcctggagcagtctgtc
cgagactcctgcgagggtctaatggtgaagactctggagaaggatgccacctatgaaatt
gctaagcgctctcacaactggctcaagctgaagaaggactacctggacggggtgggggac
acgatggatctgtgtgtgatcggcgcctacctgggaaaaggcaagcgggcgggcgcctat
gggggcttcctgctggcctgctacgatgaggagaacgaggagtttcagtctgtgtgcaag
atcgggacaggcttcaaggatgaggatctggagcagcatttcaatttcttaaaggtggac
ccagtgaagggcatttctctgaggttcccccgcttccttcggatcagagatgacaaaaag
cctgaggacgccacgactggagctcagattgctgatttgtacaagaagcagcagcagatc
cagaaccagggggagaagggcgatctggaggactactactga
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integrated database retrieval system