KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117462622
Entry
117462622         CDS       T09629                                 
Symbol
lig1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03030  DNA replication
pgeo03410  Base excision repair
pgeo03420  Nucleotide excision repair
pgeo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117462622 (lig1)
   03410 Base excision repair
    117462622 (lig1)
   03420 Nucleotide excision repair
    117462622 (lig1)
   03430 Mismatch repair
    117462622 (lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pgeo03032]
    117462622 (lig1)
   03400 DNA repair and recombination proteins [BR:pgeo03400]
    117462622 (lig1)
Enzymes [BR:pgeo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     117462622 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     117462622 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     117462622 (lig1)
DNA replication proteins [BR:pgeo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    117462622 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     117462622 (lig1)
DNA repair and recombination proteins [BR:pgeo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     117462622 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     117462622 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     117462622 (lig1)
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 117462622
NCBI-ProteinID: XP_033960785
LinkDB
Position
17:complement(35996464..36095510)
AA seq 1033 aa
MQRSIASFFQPKGKDVQKKTSNEAVKKPSKSPLKVQNGVQEADSRVKKLVKRSRQILDSD
DDDEEAPVVKEPAATIGDKEAPAKPEKKDDVFKAVPTPMSPPPAPATSKTPATPTTPVTP
MTPVTPATSTSPGTPSTPNSISPSGLVKRKTARKMFPKRKLDESGSESPKDESEAKEEPR
QKHKRPRVESPGNTDEPMEEEAKEVRVEKAVTEATSPDEEVEEKKEGVEKAVEEEKEEVE
KAVEKKKDEVEKAEEKKKDEVEKAVEEKKEEVEKAVEKKKDEVEKAVEEKKEEVEKAVEE
KKEEVEKAVEEEKEEKAEAAEMKTEAKEKKDDEKVAKKKKKEKVVEKDTQEAEKSPESQT
PRKQKETKEQKDKEPPKKSPISSFFAPRKAAVKTEKSKKSEGEKQTSPERKVSAEESKDV
KGESTSGPTDYNPARPNYHPVEHACWKQGQKVPYLAVARTFEKIEEESGRLRNIETLSNL
LRSVLLLSPDDLLCCVYLCLNQLGPAYLGLELGVGETVLMKAVAQATGRQLDKIKADAQE
KGDLGLVAESSRSNQRIMFQPASLTAGGVFRKLKEIGSMSGNSAMNKKIDIIKGLFVACR
FSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAW
IESKSLILKQTYCEMPNYDILIPVLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVM
KRFDEAAFTCEYKYDGERAQIHILENGEVRVFSRNQEDNTTKYPDIISRIPKVKKDSVVS
CVLDAEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPL
CRRRALLRESFSEVEGEFVFARYIDSDNTDSIAEFLEQSVRDSCEGLMVKTLEKDATYEI
AKRSHNWLKLKKDYLDGVGDTMDLCVIGAYLGKGKRAGAYGGFLLACYDEENEEFQSVCK
IGTGFKDEDLEQHFNFLKVDPVKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQI
QNQGEKGDLEDYY
NT seq 3102 nt   +upstreamnt  +downstreamnt
atgcagaggagcatcgcatccttctttcagcccaagggcaaagatgttcagaagaaaacc
tcaaatgaagcggtgaaaaaaccttccaaaagtcctctgaaggtgcagaacggcgtccag
gaagcggattcacgcgtgaagaagcttgtgaaacgcagccgtcagatcctggacagcgac
gacgacgatgaagaagctccggttgttaaagagccagctgctaccatcggagacaaagaa
gctccggctaaaccagaaaagaaggacgatgtcttcaaggccgttcccacccccatgtct
cctccacctgccccggccacctctaagacaccagccacccccacgacccctgtgacccct
atgacccctgtgaccccggctacttctacttcacctgggacccccagcaccccgaactcc
atctccccttctgggctcgttaaacgcaaaactgcgaggaagatgttccccaagaggaag
ctggatgagagcggcagtgagagcccgaaagacgagtcggaggccaaggaggagccgcgt
cagaaacacaagcgaccccgtgtggagagtccagggaacaccgatgaacccatggaggag
gaagcaaaagaagtacgagttgaaaaggcggtgaccgaggctacgagcccagatgaggag
gtggaggagaagaaagagggagtagaaaaggctgtggaggaggagaaagaggaagttgaa
aaggccgtggagaagaagaaagatgaagtagaaaaggccgaggagaagaagaaagatgaa
gtagaaaaggccgtggaggagaagaaagaggaagtagaaaaggccgtggagaagaagaaa
gatgaagtagaaaaggccgtggaggagaagaaagaggaagtagaaaaggccgtggaggag
aagaaagaggaagtagaaaaggccgtggaggaggagaaagaagagaaagctgaggcggcg
gaaatgaaaactgaagcaaaggagaagaaggatgatgagaaagttgccaagaagaagaag
aaggagaaggtggttgaaaaggacacgcaagaggcagaaaagagcccggaaagtcaaaca
ccgagaaagcagaaagaaacaaaagagcagaaagataaggagccgcccaaaaaatccccc
atcagcagtttctttgctccaagaaaagccgcagtaaagacggagaaatcgaagaagagc
gaaggagagaaacagacgagtccagagaggaaggtttcagcggaggagagcaaagacgtc
aaaggggagtcaacctcaggaccaacggactacaatccggcccgaccgaactaccatcct
gtggagcacgcctgctggaagcaaggccagaaagtgccgtacttggcggtggctcgcacc
tttgagaagattgaagaggagtctggcagactgaggaacatcgagacgctgtcgaacctg
ctccgctccgttctgctgctttctccagacgacctgttgtgctgcgtgtacctgtgtctg
aaccagctggggcccgcctacctggggctggagctcggtgttggagagacggtgctgatg
aaagctgtcgctcaagccactgggcgacaattggacaaaatcaaggcagatgcgcaggag
aaaggagatctgggtcttgtggccgagagttcccgtagcaaccagcgcataatgttccag
ccggccagtctgacggcagggggcgtgttcaggaaattgaaggaaatcggcagcatgagt
gggaactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgt
ttttccgaggcgcgctacatcgtcaggtccctggctgggaagctgaggatcggcctggct
gagcagagcgtcctatcagcactgagccaggctgtgtgcctcaccccccctggacaaggt
ttccctcccgccgtgatcgatgcagggaaggggatgagcgctgagagcaggcgggcctgg
atcgaatcgaagagtctcattctcaaacagacttactgcgagatgcccaattacgacatc
ctaatccccgtcctgctcaaagaaggcatcgatgagctacccaatcactgcaagctcact
ccaggtgtgcctctgcgacccatgttggctcaccccaccaagggcgtcggcgaggtgatg
aagaggtttgacgaggcggcgtttacctgcgagtacaaatacgacggagagcgcgctcag
atacacattctggagaacggagaggtgcgagtgttcagccgcaaccaggaagacaacacc
accaagtacccagatatcatctctcgcattcccaaggtgaagaaggactctgtggtgtcc
tgcgtcctggacgcggaggcggtggcctgggatcgagagaagaagcagatccagcccttc
caggtcctcaccacccgaaagagaaaggacgtggacgcttcggagatcaaagtgcaagtg
tgtgtgtacgccttcgacctcctctatctcaacggagagtccctggtgcggcagccgctg
tgtcggcgtcgggctttgctgagggaaagcttctcggaggtggagggagagtttgtgttc
gcccgatacatcgactccgacaacaccgactccatcgcagagttcctggagcagtctgtc
cgagactcctgcgagggtctaatggtgaagactctggagaaggatgccacctatgaaatt
gctaagcgctctcacaactggctcaagctgaagaaggactacctggacggggtgggggac
acgatggatctgtgtgtgatcggcgcctacctgggaaaaggcaagcgggcgggcgcctat
gggggcttcctgctggcctgctacgatgaggagaacgaggagtttcagtctgtgtgcaag
atcgggacaggcttcaaggatgaggatctggagcagcatttcaatttcttaaaggtggac
ccagtgaagggcatttctctgaggttcccccgcttccttcggatcagagatgacaaaaag
cctgaggacgccacgactggagctcagattgctgatttgtacaagaagcagcagcagatc
cagaaccagggggagaagggcgatctggaggactactactga

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