Pseudochaenichthys georgianus (South Georgia icefish): 117462735
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Entry
117462735 CDS
T09629
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117462735 (rc3h1b)
04121 Ubiquitin system [BR:
pgeo04121
]
117462735 (rc3h1b)
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
117462735 (rc3h1b)
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117462735 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
Prok-RING_4
zf-CCCH_4
zf-CCCH_UNK
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
117462735
NCBI-ProteinID:
XP_033960922
LinkDB
All DBs
Position
17:complement(23778139..23792888)
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AA seq
1120 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKVQPVTLITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLMTDDGLPLDVAVTRKPS
PLTNGSGGPSLPQLIARGTESVPYELLRKPMKMDGGSPNAPGSPPDGMDPMMPKPGMPPH
GMAHPRMPVDHLSGKHMPVVARGSPVYPQAPHPDMCYDARPPPSASQYDPPQYPSGYPYQ
QPPQYVPRDYMRNPPPPSESGPAYQDPYPGYGPPERPYQAPHSGPPFSYPHPPHHDRGRH
GTYSGPPPPPQPYPSQRDGMVRMSPAPLDMPPPSTGQGNSLYHQEPSGRDRYPSDGYYTA
GAQPPPMRTYVRGPSYSGSQPSLDYLHRRRQELLSQLEERKVISPPPFAASPTLPHSYPG
DYPSEYGEESKNMVKCREPDYAGQYSPWSCETIGSYIGTKEPKPKDVMVPGSMEMMNAEA
KSLREQSLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTAGPVQAMASTPQ
NPSSKHMAMPAEYPYGSHGGWGGASYPSHQTASSSQGHFSERLPMAATDREQLKIELQQV
NQQINQQTQMRSMETASNSMLLQREAGQPGQAAAQQQKWPAGGGSTTSVSSEQLSMELHQ
VEREIGKRTREMAMENQVAHDVQQYKMKPSENGQQDHKTQLEEISMALGEVSNGSSSLQD
SAVGGSMLSLTNKTSAMSLCSDPGATGSEMQKNGVVHSCS
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacggagttcctgctgtgcccaatctgcacacagaca
tttgaggagactgttcggcggcccatcagcttgggctgtggacatactgtctgcaagatg
tgcctgaacaagttgcaccgtaaggcctgtccctttgaccagacggccatcagcacagac
atcgagcagctacctgtcaacacagccctgttgcagctggtggggggccaggttcctaag
gttcagccagtcaccttgattactagtccagaggactcgcagcattatgaggaggcccgg
cagtgtgtggaggagctggccctctacctcaagcccctcagcaacaccagaggtgtgggc
ctgagcagcacagcccagagcatgctgagccgacccatgcagaggaaactggtaactctg
gtccactgccagctggtggaggaggagggccgcgttagagccatgagggcagcccgctct
ctgggggagagaaccgtcaccgaactcatcttgcagcaccagaatccacagcagctctct
tccaatctgtgggctgctgtgcgtgcaagaggatgtcagtttctagggccagccatgcag
gaggaagctctaaagttggtccttctcgctctagaggatggctctgctttgtccaggaag
gtgttggttctctttgtagtccaaaggctcgagccacgcttcccgcaggcctctaagacc
agcattggccacgtggtgcagctcctttacagggcctcctgcttcaaggtgaccaaacgt
gacgaggactcatccctaatgcagctgaaagaggagttccgtacttacgaggctctgcgg
cgcgagcacgactctcagatagttcagatcgccatggaaggtggactgcgcatcgcacct
gaccagtggtcttctctgttatatggagatcaatctcacaagtcccacatgcagtctatc
atagataagctgcagaccccggcgtcttttgctcagagcgtccaggagctgacgattgcg
ctgcagaggaccggagaccccgccaacctcaacaggttgcgtccccaccttgaactactg
gccaacattgatcccagtcctgatgctccccctcccacttgggagcagcttgagaaaggc
ttggtagcggtgaaaaccgtggtgcatggcctggtggacttcatccagaaccacagcaag
aaaggagctgaccctcaacagccgccccagcacagcaagtacaagacatacatgtgccgt
gacatgaagcagaagggaggctgtcctcgcggagccagctgcactttcgctcattctcag
gaagaactggagaagtatcgtaagatgaataagcgtctggcagctcgccttcctggctca
ggtgggctcatgacagatgatggccttcctcttgatgtagcagtgactaggaagccctcc
ccactcaccaatggtagcggtggaccctctttgcctcagcttattgcccgcggcacagaa
tcagtcccgtatgaactgttgcgtaaacccatgaagatggatggagggagtcccaatgcc
ccaggatcaccaccagatggcatggatccaatgatgcccaaacctggtatgccaccacat
ggcatggcccaccccaggatgccagtagaccacctctctgggaagcacatgcccgtggta
gccagaggctcgccagtgtacccccaggcaccgcatcctgatatgtgctacgacgctcgc
ccgccaccttctgcttctcagtatgaccccccacaatacccctcagggtacccctaccaa
cagccaccccagtatgtccctcgagattacatgcgtaaccctcctccccctagtgagtca
ggacctgcttaccaggacccctaccctggctacggccctccagagcgcccctaccaggcc
cctcactccggtccacctttctcttatccacaccctccacaccatgaccgaggtcgtcac
gggacctactccggccccccacctccccctcagccttacccatctcagagggatggcatg
gttagaatgagtcccgcccctctggatatgcccccaccatcaacaggacagggcaactcc
ctgtaccaccaggagcccagtggccgcgatagatacccttcagatggctactacacagcg
ggtgcccagcctccacccatgaggacttatgtcagggggccatcgtacagcggttctcag
cccagcctggactacctgcaccgacgccggcaggagctgttatcccagctggaggaaagg
aaggtcatctcccctccacccttcgctgcctcccccactcttcctcattcctaccccggt
gattatccttcagagtacggcgaggaatccaaaaacatggtgaagtgcagagaacctgac
tatgcagggcagtactctccctggtcctgtgaaaccattggctcctatattggaacaaag
gaacccaaacccaaagacgtaatggttcctggttccatggaaatgatgaatgcggaggct
aagagtctgagggaacaatcgctggaagcccctcgtaggggtgcagaagtcaaagacgat
gaccctattattccatttggcccccagcccactgtttcccgcttcggagccatctcccgc
acctcaaagacgggctatcagaccgcaggccctgtgcaggctatggcctccaccccccag
aacccaagctctaaacacatggccatgccagcagaatacccatatggaagccatggagga
tggggtggagcttcatacccctcccaccagacagcctcctcctctcagggacacttcagc
gagcggctacctatggcagctacagacagagagcagttaaagattgagctgcagcaggtc
aaccagcagatcaaccaacagacccagatgcgcagcatggagactgccagtaactccatg
ctgctgcagagggaggcaggccagccgggccaggccgcagctcagcagcagaagtggcca
gcaggaggcgggagcacaacatctgtctccagtgaacagctgagcatggagctccaccag
gtggagagagagatcggcaagaggacccgcgagatggccatggaaaaccaagtcgcccac
gatgtgcagcagtacaagatgaaaccctcagagaatggacaacaagatcacaagactcag
ctggaagaaatctccatggctcttggcgaggtgtcaaacggctctagcagtctgcaggac
agtgcagtgggcgggtccatgctgtcactgaccaataagacgtctgcgatgagcctgtgc
tctgatccaggtgccactggttcagagatgcagaagaatggcgtcgtccattcctgctct
tag
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