Pseudochaenichthys georgianus (South Georgia icefish): 117463484
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Entry
117463484 CDS
T09629
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo02010
ABC transporters
pgeo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117463484
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117463484
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pgeo02000
]
117463484
Transporters [BR:
pgeo02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
117463484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
117463484
NCBI-ProteinID:
XP_033961618
LinkDB
All DBs
Position
18:18924936..19088245
Genome browser
AA seq
2248 aa
AA seq
DB search
MGLLTQFTLLLWKNFTLRKRQKVRLVVEVIWPLFLFFILVGVRSTNKPVFKGQCHYPNKA
MPSAGVLPWLQGMMCNINNPCLNSPTPGETPGQVNNFNNSIVAGMLVELQTLVVNRSILS
KALLLADDLEQWDSVLSQTNTAEARPVILRSLLRDNETFSAHLEEDLSVPPSVVQSLLSA
QVKLNPMTSAPRPGALQSVLCEGTDLDEYIQFSTASEKETFQNVSCLLDAQQLLSAQRVL
LTNLDERNVFSEVPAALDLNAADTASLLGKTTRDALPVFEEVARLQSSMIFQAASALDFR
ADMMGSVNMLLCGKQPDVNMSRSSPPLTDDKEPVSIAAGNSSDAFCQTLVETLEETPGLR
YIWSTFRPLLQGKVLYTPDTPAAHLLVKEANNTFNALAQLRELAESWEEVGPRLYNFLQN
SSQVNTIRALLGNPVFAAVLDQRLDSTGWTSKQLTNFLYNGPPEDRPPGMPPNDWRNVYN
ATTDVLKLLSNFLGCLELNKFEAVPTESRLLSRAQELLENETYWAALVFENLQPNASLPP
PYVKYKIRMDIDEAQGTTNIKERSWSPGARDNPLSDLRYIWGGFSYLQDMMDHGIIRAHT
PSTQPLGVFAQQMPYPCYVDDVFLRSLARSLPLYMTLAWIYSVAMIVKGIVAEKEARLKE
TVRIMGLRGAIYWLSWAVSSLLPLALSAVLLALILKYGKVLQYSDPSVIFVFLLVFCLAT
VTQCFFISVFFSKANLAAACGGLIYFVLYLPHILCYAWRDVMGFQVKVVVSLLSCVAFGY
GCENFAKYEEQGIGIQWSNILQSPEEGERYTFIVSIVMMLFDAAFYWLLTWYIENVFPGQ
YGIPKPWYFPVTASYWCGTASVTTAPPPSLKDPSVNSEYLEKAPPDMKAGVSIRNLVKIY
KTGKKLAVDGLSMDFYEDQITSFLGHNGAGKTTTMSILTGLFPPTSGTALINGYDILSDM
DSIRKYLGMCPQHNVLFNELTVEEHIYFYARLKGLSRQEVRTEMEQMIEDVGLLHKRKDL
AKNLSGGMQRKLSVAIAFVGGSKIVILDEPTAGVDPYARRGIWDLLLKYKQGRTIILSTH
HMDEADILGDRIAIISNGKMRCCGSSLFLKKCFGSGYYLTLVREGSVKMAAQRNGIIQSQ
VKDEKDFTSRSSSPDDGISSQTWANSDPSDVSDVGQIVRCHVPGAVFLESIGQEITFVLP
YAGARDGSFALLFSELDRASAELGLTSYGISDTTLEEIFLKVAEETGVDSEKPTTKELPE
QDCRRNSFKRNSISSASAKRETCFLSLSLAELKEKFTSKVEDLQRSASLSGRGSSVIVGG
QLIRRQFLALFIKRFHHARRSRKGLIAQVVLPAAFVCLSLIFSLIVPPFTEYPSLELQPW
MYGLPQTTFYSNDGPGNAEVSKVVETLVNNPGFGTRCMTGDPIPKLPCSSAGSDWFTPPV
DPSITDIFLQGNWSMANPSPSCQCSTPKRTIMLPDCSPGAGGLPPPQRIQNTTDTLLDLT
GRNMTDFLVKTFENSGKTRFGGLSVGGVNSQVRMSEAAIEASFRDLRELISPFQDNVTHQ
ILQNAEVLLKKLGTRDNVKVWFYNQAWHGMASFLSVANNAILRGNLPAGTDPRSYGISVS
NHPLNLTKAQLSYAAMATTSTDVVVSICVIFAMSFIPASFVLFLIQERVNKAKHLQFVSG
VNPAVYWLANFAWDMCNYIVPCLIVIVIFLCFQQKAYVSPPNLPALILLLVMYGWSITPM
MYPASFIFSVPSTAYVVLTCINLFIGINGSIATFVMELINDNNVSRINNIVKQVLLIFPH
FCLGRGLIDMAKNQAMATLFSSFGEDRFQDPLSWDMVGKNLCAMSIQGAVMFTVTILIQY
KFFCKPRLVSGKSLSGEEKEDVDVARERERVHGGGAQSDLLRICDLTKVYSQRSTPAVDR
LCVGVPPAECFGLLGINGAGKTTTFKMLTGDIPVSGGEAFLNGYSIRTEMRDVHQNLGYC
PQFDAIDELLTGREHLELYARLRGVPEKEVAKVAEWGVQKLGLVKYSNKSAGTYSGGNKR
KLSTAIALIGCPPVVFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEECEALC
TRMAIMVNGAFKCLGSIQHLKSRFGDGYTVTVRVGGSPPALKPVEDFVQQGFPGSVLKEK
HHNTLQYQLPYTEGALAHIFSQFTRHQQRLQVEDYSVSQTTLDQVFVNFARQQHAEEEDA
RTFDNAVDTSDELPLQAVGTHEEHLKQV
NT seq
6747 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacgcagttcactctgctgctgtggaagaacttcactctgcggaagaga
caaaaggtgcgtctggtggtggaagtgatctggcctctgttcctcttcttcatcctggtt
ggggtgcgctccaccaacaagcctgtgtttaaaggacaatgtcactacccaaacaaagcc
atgccttcggccggcgtgctaccctggctgcaggggatgatgtgcaacatcaacaacccc
tgtctgaactctcccaccccgggggagacaccgggacaagtcaacaacttcaacaactcc
atagttgctgggatgttagtggagctgcagacgctggtggtgaacagatctattctcagc
aaggccctgctgctggcagacgacctggagcagtgggactccgtcttgtcccagaccaac
actgctgaggctcggccagtgatcctgaggagtcttctgagagacaatgaaaccttctcc
gctcatctggaagaggacttgtcggtgcctccatcagtcgtccaaagcctcctgagcgct
caggttaaactcaacccaatgacgagcgccccgcggcccggcgccctgcagagcgtcctg
tgtgagggcacagatctagacgagtacatccagtttagcaccgcgtcagagaaggagact
ttccaaaatgtcagctgcttgctcgatgctcagcagctgctcagcgctcagagagttctg
ctgacaaatctggacgagaggaacgttttctcagaggtgcctgcagctctggatctgaat
gcagcagacaccgcctccctgttggggaaaaccactcgagatgcattaccagtgtttgag
gaggtggctaggctgcagagctccatgatcttccaggcggccagtgcattggatttccga
gcagacatgatgggcagcgtcaatatgctcctgtgtggaaagcagcctgacgtcaatatg
agccgcagctcacctccactgacggacgacaaggagccagtctccatagctgcgggaaac
agctctgacgctttctgtcagacgctggtcgagaccctggaagaaacacctggcctgcgc
tacatctggagcaccttcaggccgctgctgcaggggaaggtcctctacacccccgacacc
cccgctgcacacctcctggtgaaagaggcaaacaacacattcaacgccttggcccagctg
agagagctcgctgagtcctgggaggaagtcgggccccggctctacaacttcctgcagaac
agctctcaagtcaacacaatacgggcgttgctggggaatccggtgtttgccgctgtgttg
gatcaacgcctagacagcacggggtggacgtccaagcagctcaccaacttcctgtacaac
gggcccccggaggaccgcccccccggcatgccccccaacgactggagaaacgtttacaac
gccaccaccgacgtcctgaagctgctctccaacttcctgggctgtttggagctcaataag
tttgaggcggtccccactgagagccgtctgttgagcagagcgcaggagctcctggagaac
gagacgtactgggccgcgttggtgtttgagaacctgcagcccaacgccagcctccccccg
ccctacgtcaagtacaaaatccgtatggacatcgacgaggcccagggcaccaccaacata
aaggaaaggtcgtggtctccgggggcccgggacaacccccttagcgacctgcgctacatc
tggggaggcttctcctacctgcaggacatgatggaccacggcatcatccgggcgcacacc
cccagcacgcagccgcttggggtgttcgcgcagcagatgccctacccgtgctacgtggat
gacgtgttcctgcgctctctggcccgctccctgcctttatacatgacgttagcgtggatc
tactcggtggccatgatcgtgaagggcatcgtggcggagaaggaggcgcgtctgaaggag
acggtgaggatcatgggtctgcggggggccatctactggctcagctgggcggtgtccagc
ctgctgccgctggccctcagcgccgtgctcctcgctctcatcctgaagtacggtaaggtt
ctgcagtacagcgacccctctgtgatcttcgtcttcctgctggtgttctgcctggccacc
gtcacgcagtgcttcttcatcagcgtcttcttctccaaggctaacctcgcagcggcgtgc
ggcggcctcatctacttcgtcctctacctgccgcacatcctctgctacgcctggagggac
gtcatgggcttccaggtcaaggtggtggtgagtctgctgtcctgcgtggcgttcgggtac
ggctgcgagaactttgcgaagtacgaggagcaaggcatcgggatccagtggtccaacatc
ctccagagcccggaggagggcgagaggtacaccttcatcgtctccatcgtcatgatgctg
ttcgacgccgccttttactggctgctcacctggtacatcgagaacgtcttcccaggtcag
tatgggatcccgaagccgtggtacttccccgtcacggcgtcgtactggtgcgggaccgcc
tctgtgacgaccgctccccccccctctctgaaggacccctccgtaaacagcgagtatctg
gagaaagcaccgcccgatatgaaagcaggcgtctcaatccgtaacctggttaaaatctac
aagacggggaagaagctggcggtggacggcctcagcatggacttctacgaggatcagatc
acgtctttcctcggacacaacggagctgggaaaaccaccaccatgtccatcctgaccggc
ctgttccctcctacatcgggaacagctctgatcaacggatacgacatcctgtctgacatg
gactccatcaggaagtatctgggaatgtgtccgcagcacaacgtcttgttcaatgagctg
acagtggaggagcatatctacttctacgcccgtctgaagggactcagccgccaggaggtg
cggacggagatggagcagatgattgaggatgttggtttactgcacaagaggaaggatctg
gctaagaacctgtcaggcgggatgcagaggaagctgtctgtggcgatagcgtttgtcggc
ggctcaaaaatcgtcatcctggatgaacccacagcgggtgtggacccctacgcccgcagg
gggatctgggacctgctgctcaaatacaaacaaggccgcaccatcatcctgtccacacac
cacatggacgaggcggacatcttgggggatcgcatcgccatcatctccaacgggaagatg
cgctgctgcggctcctcgctcttcctgaagaagtgcttcggcagcggctactacctgacg
ctggtgcgagaggggagcgtcaagatggcggcacagagaaacgggatcattcagagtcag
gtcaaggatgagaaagacttcacctctcgcagcagcagtccagatgacggcatcagcagt
cagacctgggccaactcggacccctcagacgtgtcagatgtgggtcagattgtgcggtgc
cacgtccccggggccgtcttcctggagagcatcggccaggagatcaccttcgtgctgccg
tacgccggagccagagatgggagcttcgctctgctgttctcagagctggaccgggcctcc
gctgagctcggactcaccagctacggcatctccgacaccacgctggaggagatatttctc
aaagtggcagaagaaaccggagtggattcagaaaagcccacaacaaaggagctgccagag
caagactgcaggagaaactcattcaagaggaatagcatttccagcgcctctgcaaagaga
gaaacttgttttctttctctttcccttgcagagttaaaggagaagttcacaagtaaagtg
gaagacctccagaggagcgccagcctcagtgggcgggggtcctcggtcattgtcgggggg
cagctgattagaaggcagttcctggcgctcttcatcaaacgcttccaccacgcccgccgc
agccgcaagggcctcatcgcacaggtggtgttacctgcagcctttgtgtgtctgtctctg
atcttctctctcatcgtgccccccttcacggagtaccccagcctggagctgcagccctgg
atgtacgggctgcctcaaaccactttttacagcaatgatggcccgggtaatgcagaggtg
tctaaggtggtggagacgctggtgaacaatcctggctttggcactcgctgcatgactgga
gacccaataccgaagctcccgtgttcctcggctggctctgattggttcactcccccggtg
gatccgtccatcaccgacatcttcctgcaggggaactggagcatggccaacccctccccc
tcctgccagtgcagcacacctaaacgcaccatcatgttacctgactgctccccgggagca
ggaggcctgcccccccctcagaggatacagaacactacagacaccttgctggatttaacc
ggacgtaacatgacagacttcctggtgaagacgtttgaaaactcggggaagacgaggttc
ggaggcctttcagtcggaggagtaaactctcaggtccgtatgagcgaggcggcgatcgaa
gcatcatttagagatctccgggagctcatcagtcctttccaggataatgtgacgcatcag
atcctgcagaatgccgaggtgctgctgaagaagctgggaaccagggacaacgtgaaggtg
tggttctacaaccaggcgtggcacggcatggcgtccttcctcagcgtggccaacaacgcc
atcctgaggggcaacctgcctgcaggaacggacccccgcagctacggcatctccgtgtcc
aaccaccccctcaacctcaccaaggcgcagctgtcctacgcggccatggccacgacttcc
accgacgtggtggtgtccatctgcgttatcttcgccatgtcgttcatccctgccagcttc
gtcctcttcctcatccaggagagggtgaacaaagccaaacatctgcagtttgtcagcgga
gtcaaccccgccgtgtactggctggccaacttcgcctgggacatgtgtaactacatcgtc
ccgtgcttgatagtgatcgtgatcttcctctgcttccaacaaaaagcctacgtttccccc
cccaaccttcctgctctgattctgctgctcgtaatgtatgggtggtccatcacccccatg
atgtaccccgcctccttcatcttcagcgtgcccagcacagcgtacgtggtgctgacctgc
atcaacctctttatcgggatcaacggcagcatcgccaccttcgtcatggagctcattaat
gacaataatgtgtcccgcatcaacaacatcgtgaagcaggtgctgctcatcttccctcac
ttctgtctggggagggggctcatcgacatggccaagaaccaggccatggccacgctcttc
agcagcttcggggaggaccgtttccaggacccgctcagttgggacatggtggggaagaat
ctgtgcgctatgtccatccagggagccgtcatgttcaccgtcaccatcctcatccagtac
aagttcttctgcaagccccggctggtttcagggaagtctttatcaggggaggagaaggag
gacgtcgatgtggcgcgggaacgagagcgtgtgcacggcggcggagcgcagagcgacctg
ctgaggatctgtgacctcaccaaggtgtattctcagaggagcacccccgctgtggatcgg
ctctgtgtgggagtacctcctgcagagtgtttcggcttgctgggaatcaacggggccggg
aagaccaccaccttcaagatgctgacaggagacatccccgtctccggaggggaggctttc
ctaaacgggtacagcatccggacggagatgagggacgtgcatcagaacctgggatactgt
cctcagtttgacgccatcgacgagctgctgacggggcgcgagcacctggagctttacgcc
cggttacgaggagtcccagagaaagaggtcgcaaaggtggcagagtggggggtgcagaag
ctggggctggtgaaatactccaacaagtcggcagggacgtacagcggcgggaacaaacgc
aaactgtccaccgccatcgcgctcatcggctgccctcccgtcgtcttcctggacgagccc
accacaggcatggaccctaaggcccggcgcttcctgtgggactgcatcctgagcgtcatc
aaggaggggcgctccgtcatcctgacttctcacagcatggaggagtgtgaagctctctgc
acccgcatggccatcatggtcaacggtgcctttaagtgcctcgggagcatccagcatctg
aagagcagattcggtgatggctacacggtgacggtgcgtgtgggcggctccccccccgct
ctgaagccggtggaggactttgtgcagcaggggttcccaggcagcgtgctgaaggagaag
catcacaacacgctgcagtaccagctgccctacacagagggggcgctggcacacatcttc
agccagttcacccgccaccagcagcgcctgcaggtggaggactactctgtctcccagaca
acgctggaccaggtgtttgtgaactttgcgaggcagcagcatgcggaggaggaggacgct
cggaccttcgacaacgccgtggacacttcagacgagctgccgctgcaggctgtgggaact
cacgaggaacacctgaaacaagtctga
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integrated database retrieval system
