Pseudochaenichthys georgianus (South Georgia icefish): 117463697
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Entry
117463697 CDS
T09629
Symbol
col4a5
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04382
Cornified envelope formation
pgeo04510
Focal adhesion
pgeo04512
ECM-receptor interaction
pgeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117463697 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117463697 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117463697 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117463697 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pgeo04147
]
117463697 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
pgeo00536
]
117463697 (col4a5)
Exosome [BR:
pgeo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117463697 (col4a5)
Glycosaminoglycan binding proteins [BR:
pgeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117463697 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117463697
NCBI-ProteinID:
XP_071062593
LinkDB
All DBs
Position
18:2609601..2677655
Genome browser
AA seq
1685 aa
AA seq
DB search
MNKDLKSLSQLAVPLLLFALCVAVQRTESAACHGCVGSKCDCSGVKGTKGERGFPGLTGQ
PGVPGFPGPEGPIGGRGEKGTDGSQGLYGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPGP
RGIAGRAANGTKGDRGFPGIGGILGQQGQPGVPGLPGIKGDPGDVISTNRFGEKGSVGLP
GLPGVPGSSGPPGLQGPLGPQGHRGPDGRSGPPGSPGPKGNMGLNFQGPKGEKGEPGLAG
PAGPPGQVGEQKRPPETEIQRGDKGDPGLQGFQGDPGYPGAPGPSGGQKGGKGEAGDAGK
RGKNGKDGDPGGSGFPGGKGDSGQPGPPGRDGETGFKGDRGYPGPPGVVIGSQTGSGQVG
PKGEPGYPGSPGYKGERGPGGLSGPQGAPGLSATGGGGVSGPPGFQGEKGLKGDAGVTGL
SLPGPPGRTGSTGGQGAPGLPGPPGFSSGQQNCVAGEPGRPGVHGERGFPGGSGQKGDKG
ETCVNCFGGTNGIPGPQGPAGQPGFPGGPGGPGVKGDRGYPGSPGSSGPAGPSGSQGSPG
FPGQKGDPGDAVTVSGGRGDKGDSGFPGSPGLPGLDGRLGRDGQPGNPGAKGTPGSLLVK
GERGPPGDSGPSGNPGDRGPGGAPGFGPQGSTGDKGVQGVSGRSGGPGAPGTKGEPGLAI
AEKGSSGSPGLDGSPGSSGSPGNPGGPGQNGFPGLPGMKGDPGHPGIGLPGPPGVKGFPG
IPGQNGPSAGPGRPGVDGLPGQPGFPGSKGEPGFGLPGPPGLPGVSGSKGFTGVKGDPGF
SGGPGSPGRSGSDGGPGSKGDPGTPGIPGARGPSGSPTTGSLGQPGPPGPSGPMGSPGFP
GSTGGKGDPGPPGLDIPGLPGERGGNGFPGSPGQVGSPGPLGGPGRDGLPGLPGQKGDMG
SMGTPGPSGGPGGPGGPGGPGFKGEPGFSGRDGSPGGPGGKGDRGDHGVTGPPGTSLPPS
VTKGTKGDPGLPGGPGFSGQKGVPGLSGDPGLSGSDGRPGLPGPPGPKGDSGIPGGPGGS
GGPGGKGSMGEMGFPGPSGQKGLSGQPGRSGGPGQHGGSGFPGSKGEPGSAGVGPPGSGG
LKGEPGQPGFPGNSGLKGTPGSSGQPGGPGGPGSKGDSGLPGFQGSPGTPGPKGLDGGSG
GPGLTGAPGRPGESGRSGGPGQPGDKGQAGRDGIPGPAGVKGDPGLPGYGGPGASGLPGL
PGSKGDSGGAGPSGTPGFPGSKGDAGFPGNPGPSGNSGPSGSPGLALQGPKGLSGPPGPP
GRAGQGGPQGPRGPPGSGGIKGDKGIPGALGQPGFGGQKGESGGPGFPGTSGLNGGSGLK
GDIGLPGVPGFPGSKGESGLPGGSGLNGDPGDAGGPGPPGDAGLSPTPIVVKGERGPPGS
SGLPGGRGSPGSPGREGLTGQPGGPGDSGADGPPGFSGPNGRKGDTGPAGSPGTRGIPGP
TGSDGPQGLPGPPGSGSAAHGFLITRHSQGHEVPYCPEGTSPIYDGYSLLYVQGNERAHG
QDLGSAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPSSMAPITGEGIKPF
ISRCSVCEAPAMVIAVHSQTIQIPACPSNWEALWIGYSFMMHTSAGAEGSGQALASPGSC
LEEFRSAPFIECHGRGTCNYYGNSYSFWLATVEPSEMFRKPQSETLKAGNLRTRVSRCVV
CMKRT
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacttgaagagcctgagccagctcgccgtgcctctgctgcttttcgccctg
tgcgtcgcggtgcagcgaaccgagtcagcggcttgccatggctgtgtgggatccaaatgt
gactgcagtggagtaaaaggaaccaagggtgaacggggtttcccgggtctcaccggacag
ccaggggttccaggtttccccggacctgaggggccaatcggaggcagaggagagaagggt
actgatggatctcaggggctttatggtccaaaaggaataagagggccatctggattgcca
ggattcccaggaacgccaggacttcccggtctgcccggccaggatggaccgccaggaccg
agaggaattgcgggccgggctgcaaacgggacaaagggcgacaggggtttcccaggaatt
ggaggaattctcggtcagcaggggcagccgggtgtacctggtctgccggggataaagggc
gacccgggtgatgtgatctccaccaatcgttttggagagaaaggttcagtggggctgccc
ggactaccaggagttcctggaagttctggaccacccggtttgcaaggcccactcggccca
caaggacacagaggtcctgacggtcgttcaggtcctcccggcagtcccggaccaaaggga
aacatggggttgaacttccaaggccccaaaggagagaagggtgaaccaggtctggcaggc
cctgctggtcctccgggacaagtgggagaacagaagagaccaccggagacggagatccag
agaggagataagggagaccccggtcttcaaggttttcaaggtgatccaggatatccagga
gcccctggtccctcaggaggccagaagggaggcaagggcgaagcaggagatgcaggcaaa
cgaggcaaaaacggcaaagatggcgaccccggtggttcaggtttccccggaggtaaagga
gactcaggccagccagggcctccaggaagggatggggagacgggtttcaaaggtgatcgt
ggatacccaggcccaccaggcgtggtgatcggctcgcagacggggagtgggcaggtcggc
cctaaaggtgagcccggctaccccgggtcacctggatacaaaggagagagaggaccagga
ggtttatcgggccctcaaggagccccaggactctcagctaccgggggtggaggcgtctca
ggacctccaggcttccagggagagaaaggtctgaagggagatgctggcgttaccggcctt
tctctgccgggacccccaggacgaaccgggtccaccgggggtcagggagctccgggactc
cccggacctccaggattctcctcgggtcaacaaaactgcgttgccggagagcccggacgc
ccaggagtccatggagagagagggttccccggagggtctggacagaaaggtgataagggc
gagacgtgtgtgaactgctttggaggcaccaatggcatcccaggaccccaaggacccgcc
ggacagccaggattccccggaggtcccggaggtccaggagtcaaaggagaccgaggatac
ccaggatctccaggctcctctggacccgctggtccctccggttctcagggttctccaggt
ttccccggacagaagggagaccccggagacgccgtcacggtgagcggtgggcggggagac
aagggagacagcggattccccggatctcccggtcttcccggtttggacggtcgactcggt
cgcgatggacaacccggaaacccaggagccaaaggaactccgggttccctgctggtgaaa
ggagagcgaggaccccctggtgactcaggtccctctggtaacccaggagacagaggtcct
ggcggggccccgggcttcggacctcaagggtctacaggagacaaaggtgtccaaggagtc
tccggaagatctggagggcccggtgcccccggtactaaaggtgaacccggtctagcgatt
gcagagaaaggatcatcagggtcaccaggactggacggctctccaggatcgtccggatca
ccaggtaaccccggtgggcccggacagaacggtttcccgggattaccgggaatgaaggga
gaccccggacatcctggcatcggactcccgggacccccaggagtaaaaggattcccaggt
attcccggtcagaacggaccttcagcaggaccaggaagacccggagtggacggacttccc
ggccagcctggattccctggatctaagggtgagcctggttttggactccccggccccccc
ggtctcccaggagtctctggatctaaaggcttcaccggagtaaagggagaccccggcttc
tctggaggccccggctctcctggaagatctggatctgatggcggtcctggatccaaaggt
gaccctggaacacctggaatacctggagctcgcggcccatctggatcccccaccacgggc
tctctggggcagcccggcccccccggaccctccggaccaatgggatcaccaggattcccc
ggatcaaccggagggaagggagaccccggacccccaggtctggacatccccggtctgcca
ggagagagaggaggtaacggtttcccagggtccccgggacaagtgggatccccgggaccc
cttggagggccaggacgcgacggcctgcccggactgccaggtcagaaaggagacatgggc
tccatgggaactccaggaccctcagggggaccaggaggccccggaggacccggcgggccc
ggatttaaaggtgaaccaggtttctcaggaagagacggatctcccggcggccccggagga
aaaggagacagaggagaccacggcgttacgggacctccaggaactagtctgcccccgtcc
gtcaccaagggaaccaaaggagaccctggactaccaggtggaccaggtttctccgggcag
aaaggtgtccccggtctgtcaggggaccccggtctctcaggatcagacggtcgccctgga
ctccccggaccaccaggtccgaagggagactctggcatcccaggaggccccggtggttct
ggaggtcctggaggaaagggcagcatgggagaaatgggattcccaggaccatccggacag
aagggtctgtcaggtcagccaggtcgatccggaggtccaggacaacacggaggatctggc
ttccccggatctaaaggcgaacccggatctgctggagtcggaccccccggttccggagga
cttaagggtgaaccgggtcagccaggcttcccgggaaattcaggacttaaaggaactcca
ggatcttcaggtcaaccaggaggaccaggaggaccagggtccaaaggggactccggactg
ccaggattccaaggttctcccggtactcccggtcctaagggtctggacggcggttccggt
ggtcccggtctcactggagctccaggtagaccaggagagtctggaagatcaggaggtcca
ggacaacccggagacaagggtcaggcgggtcgggacgggatcccaggaccagctggagtc
aaaggagacccaggtcttccaggttacggtggacccggggcttccggacttccaggattg
cccggctcaaagggagactccggtggtgctggcccatctggcactcctggttttcccgga
tctaagggagatgctggttttcccggaaaccctggtccctcaggcaacagtggcccttca
gggtctccaggtctagctctgcagggccccaaaggactctcaggaccccctggacccccc
ggaagagcaggtcaaggtgggccccagggtcctcgtggtcccccaggaagtggcggcatt
aagggagataagggtattcccggcgctcttggtcagccaggctttggaggacagaaggga
gagagtggtggtcccggattcccaggtacatctggtcttaacggcggctctggtttgaag
ggagatatcggtcttcccggcgttcctggtttccctggatcaaagggagaatctggactt
cctggcggcagcggccttaacggagatcctggagatgccggaggccccggccctcctggt
gacgccggtctttctcccactcccatcgtggtgaagggagagcgcggaccccccggatcc
tcgggcctgcctggaggtcgaggatcacctggttctcctgggcgtgagggacttacaggt
cagcctggtggccccggagattctggtgctgatgggcctccgggcttcagcggacccaac
ggcaggaagggagacacgggccccgccggcagccccggcacgcgcggtatccccggcccc
actggttctgacggtcctcagggtctccccggtcctccaggatcagggtctgcagcccac
ggcttcctgatcactcgccacagtcagggacacgaagtgccgtactgccccgagggaacc
agccccatctacgacgggtactccctgctctacgtgcagggcaacgagcgcgcgcacggg
caggacctcggttcggccggcagttgtctgcgccgcttcagcaccatgcccttcatgttc
tgcaacatcaacaacgtctgtaacttcgcctcccgcaacgactactcctattggctgtcc
acacccgagcccatgcccagctccatggcccccatcaccggggagggcatcaagcctttc
atcagcaggtgctcggtgtgtgaagctccagccatggtgatcgcagtgcacagtcaaacc
atccagatccccgcctgcccctccaactgggaggccctgtggatcggatactccttcatg
atgcacaccagtgccggtgcagagggttcgggtcaggctctggcctcccccggctcctgt
ctggaggagtttcgcagcgcccccttcatcgagtgccacggcagaggaacgtgcaactac
tacgggaactcctacagcttctggctggccacggtggaaccctccgagatgttcaggaag
ccccagtctgagactctgaaggcgggtaacctgcggactcgtgtgagccgctgcgtggtc
tgcatgaagaggacgtaa
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integrated database retrieval system
