Pseudochaenichthys georgianus (South Georgia icefish): 117463740
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Entry
117463740 CDS
T09629
Symbol
focad
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117463740 (focad)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117463740 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
117463740
NCBI-ProteinID:
XP_033962028
LinkDB
All DBs
Position
18:22549541..22619336
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AA seq
1810 aa
AA seq
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MNGARPAGMMEGLKIRFDFPSPVIQAQTVRTLVAAVLKEKGSNGPITQSSPQGPALEALW
QQCCSDGALVRSSCCDAVVLLVEQQHAELQHVLHSVLNLLPSARNVQGLMKVIGRLLQMQ
ADQRDAEKHFSCPYSIRNNPHPYITALENRVDCWPALLLEIDDFIQQAAERNEPAYVTML
APFLRYLYCEPQRQPQHALLRHGLLRVLMPSHPAARSLLQNKEQDPVFESLLHCLCQLVP
HMQVDSVEAVLEFCGFVDALLQVLVPAPEQWRSERVGLTLQVLCACRCCLRLNADCRPLL
NLLQQLLPACQQELPLDELLMGVALLLLEVPATQQTSLLNLALSLVPEHGELAPWLSPVL
VLPVLQLLSCSGLTEALADQRRHRLNQDLAHSLLCRISRETDKLPQPSPPLALPLSSWYN
ELSVALSILRRVTEHPAAAADWLLSVSSALSAGQSQLCSLSLMVTHLLLTGGEDVCQLAL
KAVQALAAAEPCQVPSLLPVLLYKLGKEKNPILAHAVLNCLPNLGTHKLCVPMVLQTLNK
LASAPKLRAVAMRLLTALWKKQDRVYPDLQRLLGQQGGRGGGGGDVQWEQILSRAACLRD
ICRERPYQHGGDMLAAITLTLQQCTRPDMATPAALALQGLQELCRAEVVDFVSLWRTLGP
QLSADPRPQVVRVVSEFLALVPQLSVKSEEYQKLKEEVVSFLWNNAVSKDPEVASCGYRA
LADFPEEAHTLNLLPEAARPATKAPEHEEDEEEEKEEEEKDLSVPGPSYVKLMALTPGSV
LPAFEIFLTSLVKHEMSQMPRGVYFSALRGGNLRSDQGKTMAGVPSFMLKTYEKNKQPGL
KPGLAAGLLLSYELPVQTDREGRAMDRFLVSRSRSYQLTLAALIHEVNIQPSEWHRALLL
PQAWRGFMSRAFHAALQGRRADLGMQQKQGKEDPQEIQYRQHCAWLWARDQLTDVIKTAT
KDSPVVQGNSILALSGLASVLAKYESNLPADSEGSLRAGPEFVPTASWLAMVLNTLLSIS
SYRPSGQVFPWFLHRSYSGENTASAIARSCASLALSLLVPVLVVWQREGLLQVLSALQAG
LPGSSSAEDSQSLQFHSGLALGMVLSSLHQQRLSDVSVQKDTDVLRSALDALEDSAFNPD
LEYNTGCVLGLGLVLASICSSGQTEQQVHVSQTLDRLLSTLQDSSGQGRMLQEVLAYSVA
CVCVSAFSADIIDAAKAEEVMTSLRTLTEESQQTPGFSLALGLLVHGLSVSGHGKAEDIQ
PRLLAAWVKILLAEGCPTMQRLAAVNGLVALVGSESYLFQQTAGELELSSPQQSRLNQVI
RAVTQIITFSGAIGLQSNSACLLGHLQLAHMSTSHSHTAVPQDFSYLSERSLLRSIIDFI
TEAGRKGPEYSPPSLVKTALTPLASVGSSFQYPPINWSAVLSPLMRLSFGEDVQHQCLCL
ASCQAQTSQSASLFLGSWLAPPLVHSLSLLTRAHLYEGLGLWMKHVAEDKLQVHTESLGL
QQFQDDLRPQRLALCRSLLQGLAQAMALPNPPNSCWTLLCSTTEKIFTLLPNHIQDREVD
LYVGIAKCLSEMSDAEIDRITKVTEAQMEKTCFVLAYLTSQGRVPLLGLNDVIAGVLQGW
PQRRVGWLLLQTFYQCRLATNPNTGVSKRMEWLLELMGHIRNVAYGATPVTCGDTKQATD
FLFQVFAAAVVSWGDHSMPLLFGIRAQWFPWQPGSKPQTLQHGLYGEESSTDHALPQCML
GMPHSLALLLNKEPWSSQTHKFIDWLFSITEGPGRSLSATTISSATAALLTLKSSAEFRK
KAVWTRAYGW
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atgaatggggcgcgacccgcaggcatgatggagggtctgaagatacgctttgacttcccc
agccctgtcatacaagcccagacggtgagaactcttgttgctgccgtgctgaaggagaaa
ggttccaatgggccgatcacacagtcctctcctcagggtccggctctggaggctctgtgg
cagcagtgctgcagtgacggcgctctggtgcgctcctcctgctgcgacgccgtggtcctg
ctggtggagcagcagcatgcggagctgcagcacgtcctccacagcgtgctcaacctgctg
ccctccgccagaaatgtccaggggctgatgaaggtgattggcaggctgctgcagatgcag
gccgaccagagagacgcagaaaaacacttcagctgtccgtactccatcaggaacaaccct
cacccatacatcaccgctctggagaaccgagtggactgctggcccgctctgctgctggag
attgatgacttcatccagcaggctgcggagaggaatgaacccgcctacgtcaccatgctg
gcccccttcctgcgctacctgtactgtgagcctcagaggcagccgcagcacgccctgctg
cgccacgggctcctcagggtgctgatgccctcgcacccagcagccagatcactcctccag
aacaaggagcaggacccggtgtttgagagcctgctgcactgcctctgtcagctggtgcca
cacatgcaggtggacagtgtggaggcggtgctggagttctgtgggttcgtagacgccctg
ctgcaggttctggtcccggcccctgagcagtggaggtcagagagggtggggctgaccctc
caggtgctgtgtgcctgcaggtgctgcctccggctgaatgcagactgcagacctcttctc
aacctattacagcagctcctgccggcctgccaacaggagctaccattggacgagctgttg
atgggcgtggcccttctcctgctagaagtcccagcaacccagcagaccagcctgcttaat
ctggctctgagtctggtccctgagcatggggagctggccccctggctgagtccggtcctg
gttcttccggtgctgcagctgctgtcctgctcgggcctcaccgaggcgctggctgaccag
cggaggcacagactcaaccaggacttggcccacagcctcctctgcagaatcagcagggag
acggataagctcccacagcccagcccaccactggctcttcctctcagttcctggtacaac
gagctcagcgtggctctgtccatactgcgtagagtgacggagcacccggcggcggcagct
gattggctgctgtccgtcagctcggccctgtccgccggccagagccagctctgctccctc
agcctcatggtgacccacctcctcctcacggggggggaagacgtctgccagctggctctg
aaggccgtccaggccctcgctgctgcagagccctgccaggtcccgtctctgcttcctgtt
ctgctgtacaagctggggaaggaaaagaaccccatcctggctcatgctgtgctcaactgt
ctgccaaacctcgggactcataagctctgcgtccccatggtgctgcagacccttaacaag
ctggccagcgcccccaagctgagagccgtggcaatgcgcctcctgaccgctctgtggaag
aaacaggatcgtgtctaccctgatctgcagcgtctgctgggccagcagggcggcaggggg
gggggggggggggacgtccagtgggagcagatcctgtccagagcggcctgcctccgagac
atctgcagagagaggccttaccagcatggaggggacatgctggctgccatcacgctgact
ctgcagcagtgcacccgaccagacatggcaacccccgctgctctcgcactacaaggacta
caggagctgtgccgggcagaggtggtggacttcgtctcgctatggaggaccctcggcccc
cagctgagcgcagacccccgtcctcaggtggtcagagtggtctctgagttcctggctctg
gttccccagctcagcgtcaagtcggaggaataccagaaattgaaggaggaggtggtcagc
tttctctggaataatgctgtgagcaaggatccagaggtggccagctgtggctacagagcc
ttggcagattttcccgaagaggcccacacattgaatcttcttcctgaagcagccagacca
gctacaaaggcccctgaacatgaggaggatgaagaggaggagaaggaggaggaagagaag
gacctctctgttcctggtccctcctatgtgaagctgatggctctcaccccggggtctgtc
ctgccagcctttgagatcttcctgacctcgctggtgaagcatgagatgagccagatgcct
cggggggtttacttctctgccctgagggggggcaacctgcggtcagaccaggggaaaaca
atggccggagttccatctttcatgcttaaaacctatgagaagaacaagcagcctgggctg
aagcccggcctggcagccgggctgttgctaagctacgagctgccggtgcagacggaccgt
gagggcagagccatggatcgcttcctggtcagccgcagccgcagctaccagctgaccctg
gccgccctgatccatgaagtgaacatccagccgtctgagtggcaccgggccctcctgctg
ccccaggcctggaggggcttcatgagccgggccttccacgccgccctgcagggtcgacgt
gctgatctggggatgcagcagaagcaaggcaaagaagacccccaggagatccagtacaga
cagcactgtgcctggctgtgggccagagatcagctgaccgacgtcatcaaaactgctaca
aaggacagcccggtggttcagggaaactccatcctggctctgagcggcctggcttcagtg
ctggctaaatatgagagcaaccttcctgctgacagtgaaggcagcctcagggcggggcca
gagttcgtgcccactgcctcctggttggccatggtgctgaacactctgctcagcatcagc
agctaccggccctcaggacaggtgttcccatggttcctgcaccgctcctactcgggggag
aacacggcgagcgcgatcgcccgctcctgtgccagcctggccctgtccctgctggtcccg
gtgctggtggtgtggcagagggaggggctgctccaggtcctgtcagcgctgcaggccggg
ctgccgggctccagctccgcagaggactcccagtccctgcagttccactccggcctggcg
ctgggcatggtgctgtccagtctgcaccagcagcgcctcagtgatgtctcggtccagaag
gacactgatgtcctccgcagcgcgctggacgctctggaggacagcgccttcaaccccgac
ctggagtacaacacgggctgtgtgctgggcctgggtctggtgctggcctctatctgcagc
agtggacagacggagcaacaagtccacgtgtcccagaccctggacagactgctgtccacc
ctgcaggacagcagcgggcaggggcgcatgctgcaggaggtgttggcgtactcggtggcg
tgtgtgtgtgtgtcggccttcagcgcagacatcatagacgctgcgaaggctgaggaggtc
atgacctctctgcgcaccctgaccgaggagagccagcagaccccgggcttctccctggct
ctggggctgctggtgcacggcctgtccgtgtccggccacgggaaggccgaggacatccag
ccccgcctgctggctgcctgggtgaagatcctcctggcagagggctgtcccacaatgcag
cggctggctgccgtcaacggcctggtggcgctggtggggtctgagagctacctcttccag
caaaccgccggtgagctggagctgtcctctccgcagcagagccgcctgaaccaggtgatc
cgagccgtcacacagatcatcaccttctctggagccatcggcctgcagtccaacagcgcc
tgtctgctgggacacctgcagctggcccacatgtccaccagtcacagccacaccgcagtc
cctcaggacttcagttacctctcagagagaagtctcctcaggtccatcattgacttcatc
acagaggcaggaagaaaaggtccagagtattcccctccatctctggtgaagacggctctg
accccgttggcctccgttggatccagtttccagtacccccccatcaactggagcgccgtg
ctgtcccctctgatgagactcagcttcggagaggacgtgcagcaccagtgtctgtgcctc
gcatcctgtcaggctcagacttcccagagtgcatctctcttcctgggctcctggctggcc
ccacctcttgtgcacagtctcagtctcctgacccgggcccacctgtatgagggtctgggt
ctgtggatgaagcatgtggctgaggacaagctgcaggtccacacagagagtctgggtctg
cagcagttccaggacgacctccgaccccagcgcctggccctgtgccgctccctgctgcag
ggcctggctcaggccatggccctccccaacccccccaacagctgctggaccctcctctgc
tccaccacggagaagatcttcaccctgctgcccaaccacatccaggatcgtgaggtggat
ttgtacgtgggaatcgccaaatgtctgtctgagatgtccgatgcagagatcgaccggatc
acgaaagtaaccgaggctcagatggagaagacctgcttcgtgctggcctacctgacctcc
cagggcagagtccccctgctggggctcaatgacgtcatcgcgggggtgctccagggctgg
ccccagcgcagagtcggctggctccttctgcagaccttctaccagtgtcgcctagcaacc
aaccctaacacaggcgtttccaaacgaatggagtggcttctggagctgatgggacacatc
cgaaatgttgcctacggtgcaacccccgtcacatgtggagacacgaagcaggccacagac
ttcctgttccaggtgtttgctgcagctgtggtttcctggggggaccactccatgcccctc
ctctttggcattagggcccagtggttcccgtggcaacccggctccaagccccaaacccta
caacacggtctatacggtgaggagtcctccactgaccacgccctgccgcagtgcatgctg
ggaatgccccacagcctggctctgcttctgaacaaagagccctggagcagccagacacac
aagttcatagactggcttttcagcatcacagaaggtcctggacggagtctgtcggccaca
accatcagctcagccacagccgccctgctgaccctgaagtcctctgccgagtttaggaag
aaagccgtgtggaccagagcgtacgggtggtag
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