KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117464071
Entry
117464071         CDS       T09629                                 
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04382  Cornified envelope formation
pgeo04510  Focal adhesion
pgeo04512  ECM-receptor interaction
pgeo04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117464071 (col4a6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117464071 (col4a6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117464071 (col4a6)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    117464071 (col4a6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pgeo04147]
    117464071 (col4a6)
   00536 Glycosaminoglycan binding proteins [BR:pgeo00536]
    117464071 (col4a6)
Exosome [BR:pgeo04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   117464071 (col4a6)
Glycosaminoglycan binding proteins [BR:pgeo00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117464071 (col4a6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 117464071
NCBI-ProteinID: XP_071062709
LinkDB
Position
18:complement(2432841..2604028)
AA seq 1712 aa
MKLLMCMLAVALAVGSAHGGNEFDEPCAGRNCGEGCRCNPEKGSRGRPGHLGEVGSSGPE
GPRGGTGPSGPKGEKGHVGYKGPSGQKGDKGPMGVPGFRGTDGVPGHPGLDGGRGPSGLD
GCNGTRGEAGDPGYGIGAPGPAGLSGPFGPKGQKGDPRYISDDGSTSSPGYPGQNGQPGI
RGPEGPSGYPGPMGPEGYSGPPGPPGLPGPMGSRSDGYEGEKGDKGDVGLPGPSGTPGDG
SLRSEQTLTIYKGDKGIPGPKGRRGFPGIPGQPGPFGFGGEPGEKGILGYPGLRGAPGLN
GPPGYPGQLGLRGTPGLSGQPGYIGRKGEQGDHGAPGPPAFVSGLGATVQGESGDSGLNG
LPGTPGDPGPLGYPGPPGPPGIVGYGTGNGSPGYPGTPGPRGEKGNAGIPGYGSEGLPGS
SGLPGSSGLPGPPGPSRVQGPIRIATQPCVIYPEVPTEAPIAYPGQPGLPGSRGLPGNNG
FNGYKGESGDCACLGGGTSGTPGLQGPPGPSGNPGYAGRKGELGDGGTPGFGGNQGPTGR
SGEPGIYGRKGEKGTSFYPNLGLGVKGELGGNGPRGPNGETGKPGRDGISGFPGTPGPPG
DGGYGTVGEKGFPGYPGAKGRPGEPGELGGGYVGTPGFRGDAGEPGISGLPGQPGLPGPR
GENSCAGVNDDGEGTGTVLPCSIPGEIGEPGYPGGLGRPGPKGQSGFPGGPGRPGFDGSK
GDRGNPGFGGQPGPQGFPGPRGDSGIPGGPGQSFDGGRGKDGVPGRPGGKGQPGEVLGAT
PGSSGQNGRPGTPGDKGQPGTPAGPGQPGGDGRFGVPGLKGERGVDGYPGNNGLPGLPGE
PTFGILGRPGFPGNVGLSGSPGFPGRKGDRGDPGFPGPAGMKGTPGVPGTPGTPGARGPS
GPPGPGTRDGIPGTPGRKGESGFPGLMGFPGLPGRPGSSGFPGGKGQAGGQGRNGLNGGP
GYSGAKGDRGYPGSPGLPSPPFRSEFVEKGEPGNNGGSGLPGFPGPRGDKGFPAQPGRRG
LPGLPGYAEQSKGQPGVPGYPGQPGTPGYPGPKGESGIMGFPGMAGPRGDDGTPGFNGNP
GENGRPGGKGSPGESYGYPGRSGAKGQPGDSGFPGGRANDGAPGDSGFPGGPGYPGSKGG
PGDGGRPGITGSHGFPGPKGQSGYPGRPGADGTPGPPAGPGGPGAKGLPGSPGLDGLNGL
AGPKGLPGTPGGNAGGRPGASGIPGLKGERGSYYPGGPGYPGAKGQRGDQGGPGRSGFPG
LPGPPGPTVGSDVLGPLGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDRGDPGLPGFPG
SPGRKGEPGFPGGPGLPGSPGFKGGIGESGYSGGPGLKGYPGDSGYYGHKGAKGVQGRPG
RKGAPGHMIPRIPQDFERPYGEIGYPGGGGGSGTPGEPGQPGLPGRSGSKGRPGPGGKLG
QTGPPGYPGSIGEAGSPGFPGPAGEQGATGSTGRSGAPGAVGRGSSIGYTLVKHSQNAQV
PMCPQGMATLWDGYSLLFVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEVCYYASRN
DKSYWLSTSAPIPMMPVAEQQIQQYISRCSVCEAPSLAVAVHSQDLSIPTCPPGWRSLWI
GYSFLMHTAAGSEGGGQSLNSPGSCLEDFRATPFIECNGAKGSCHFFANEYSFWLTTVQP
GTEFLYAPGQETLKGGQERSRVSRCQVCSKLL
NT seq 5139 nt   +upstreamnt  +downstreamnt
atgaaactcctgatgtgtatgctagcagtcgccttggcggtgggatctgcgcacggaggc
aacgagtttgacgagccgtgtgccggacgcaactgtggagaaggatgcagatgcaatccg
gagaaaggcagcaggggtcgtccagggcatcttggagaagtgggttcgagcggacctgag
ggtcctcgggggggaacgggaccctcagggcccaaaggagagaagggccacgtcggatat
aaaggaccttctggccagaaaggagacaaggggcctatgggagtgcctgggttccgggga
actgatggagtacctggtcaccccggtctggacgggggacgaggaccctctggactggac
ggctgtaacgggacgagaggagaagccggagaccccggttacgggatcggagcgcccgga
cccgctggactctctgggccttttgggccgaagggtcagaaaggagaccctcgatacatc
tcggacgacggttccacgagttcaccaggttatccaggacaaaacggtcaacctggaatc
agaggtcctgagggtccgtccggttaccccggtccaatggggcccgagggatactctggc
ccacctggtcctcccggtctcccagggccaatggggagccgcagtgacggatatgaagga
gagaaaggagacaagggcgacgtgggtcttcccggacccagcggtactccgggcgacggc
tcgctaagaagcgaacaaactctcactatctacaaaggagataagggtatacctggtcca
aagggaagaagaggatttcctggaattcctggtcaacctggaccttttggctttggtgga
gaacccggagagaagggaattcttggataccccggattaagaggtgctcctggtttgaac
gggcctcctggatatcccggacaattgggacttagaggaactccaggtttgagcgggcaa
ccgggatacatcggaagaaagggtgagcagggagatcacggagcaccaggacccccagcc
ttcgtgagtggtctgggcgctactgttcaaggagagtcaggtgactcgggtctcaacggg
ctgcccggtacccctggtgaccccggacctctgggataccccggacccccaggacctcca
ggaattgttggttatgggacaggtaacggatccccaggttatcccgggacccccggccca
agaggagagaagggaaacgcaggaataccaggatatggctctgaaggactccccggatcc
tctggcctccccggatcctctggcctccccggacccccgggaccctccagagtgcaaggc
cctattagaattgccactcaaccctgcgtcatctaccccgaggttcccaccgaagctccc
atagcttaccccggccagcctggactgcccggctctagaggtctgcccggcaacaatgga
ttcaatggatacaaaggtgaatccggagactgcgcctgcctcggggggggaacgtcggga
acgcctgggttacagggaccgcccggacccagcgggaaccccggatacgccggaagaaag
ggggagctgggagatggaggcacacctggctttggaggcaatcagggacctactggtcgt
tccggtgaacccggaatctacggtcgtaagggggagaaaggaacgtctttttaccccaat
cttggtttaggcgtgaaaggagaactcggaggaaatggcccccgcggacctaacggagaa
actggaaaacccggaagagacggaatttccggattccctggaactcctggaccccccggt
gacggtggatacggcacagtcggagagaaagggttcccaggatacccgggtgctaagggt
cgtcccggagaacctggagaactcggcggaggatacgtcggcacgccaggtttccgtgga
gatgctggagagccgggaatatcgggactaccaggacaaccagggttaccaggaccacga
ggtgaaaacagctgtgcaggggttaatgacgacggagagggaacgggcacagttttaccg
tgctccatacccggtgagatcggagagcccggataccccggaggactcggacgaccaggc
cctaaaggtcagtcagggttcccaggaggacccggacgtcccggatttgacgggtccaaa
ggagacagaggaaaccccggttttggaggacaacctggaccacaaggtttccccggaccc
agaggggattccggtattcccggcggtcccggacagagctttgacggcggcagagggaag
gatggagttcctggtcgtcccggaggaaagggccagcctggagaggtgctgggggccacg
cctggctcctcgggacagaacggacgaccaggaacgcctggagacaagggccagcccggg
acccctgcagggccgggacaacctggtggcgacgggcgtttcggcgttcccggtctgaag
ggagagcgaggagtggacggttaccctggtaacaacggtctccccggacttccaggcgag
ccgacctttggtattctcggtcgtcccggttttcccggtaatgtcggactgagcggatct
ccaggtttccccggtagaaagggagacagaggagacccaggtttcccaggaccagcgggg
atgaaggggacccccggcgtgcccggtacccctggaactccaggggcccgaggaccctcc
ggaccccccggaccgggaactagagacgggatcccaggaacaccgggaagaaagggtgag
tcaggtttcccaggactgatgggcttccctggactcccgggacgtcctggatcttctggc
ttccctggagggaaaggacaggctggaggacagggtagaaacggactcaacggcggcccc
gggtactccggagcgaaaggggacagaggataccccggctcccccggtctgccctcccct
ccgttcagatcagagtttgtagaaaaaggagaaccaggaaacaacggaggcagcggcctt
cctggtttccccggacccagaggtgacaagggtttcccggctcaacctggtcgtcggggt
cttcccggacttcctggttacgccgaacagagcaaaggacagcctggagtacctggttac
cccgggcaaccaggtaccccaggataccctggaccaaagggagaatctggtattatggga
ttccccggcatggctggaccgaggggtgatgacggcacacctggtttcaatggaaatcct
ggagaaaatggccgaccaggaggcaaaggttctcccggagagagctacggttatcccgga
agatcgggagctaaaggacaacccggagattcaggcttcccaggcgggcgtgcgaatgac
ggcgctcccggtgacagcggtttcccaggaggtccaggctaccccggatcaaagggaggt
ccaggtgatggaggccggcctggaataacgggctcccatggtttccccgggccaaaaggt
cagtctggatatccaggaagaccaggagcagacgggactcctggacctcctgctgggcct
ggaggtcccggagccaaaggtttacctggatcccctggtttggatggtcttaatggcctc
gctggacctaaaggcctcccaggaacaccaggtgggaacgctggaggtcgtccaggagct
tccggtattcccggtctgaagggagagagaggatcctactaccctgggggaccaggatac
cccggagccaagggacagagaggagaccaaggtggtcccggacgctcagggttccccggt
cttcccggaccccccggtcccacggtgggatcggacgttcttggacctcttggagaccct
ggactccctggactggatggagaatatggtttccagggtcctccaggtcctcccggtcct
cctggtcccggcacagctcagggagaccgaggagaccctggactcccaggtttcccagga
tcccccgggagaaagggagaacctggttttcccggaggccccggactccccggaagcccc
gggttcaaaggaggaataggagagagcggatacagcggaggtcctggtctgaagggctat
cccggtgattctggatattacggacacaaaggagccaagggagtgcaaggacgtcccggt
cgtaagggagcccccggacacatgattcccaggataccgcaagacttcgagcgaccctac
ggagaaattggttaccccggaggaggtggaggaagcgggactcctggagaacccggacag
ccgggactccccggacgttcagggtctaagggtcgtcccggtcctggaggcaaactgggc
cagactggacctcctggttaccccggatctatcggtgaggccggatcccccggtttcccc
ggacccgctggagaacaaggcgccactgggtccacgggtcgctccggagcccccggggct
gtgggtcgtggctcaagcatcggatacaccctggtgaagcacagccagaacgcccaggtg
cccatgtgtcctcagggcatggccacgctgtgggacgggtacagcctgctgttcgtggag
gggcaggagaaggctcacaaccaggacctcggtcagccggggtcttgtctcccccgcttc
agcaccatccccttcctctactgctcccccaacgaggtgtgttactacgcctctcgaaac
gacaaatcctattggctctccaccagcgctcccattcccatgatgcccgttgccgagcaa
cagatccagcaatacatcagcaggtgttcagtatgtgaggctccctctctggctgtagcc
gtgcacagccaggatctgagcatccccacctgcccccccggctggaggagtctctggatc
ggatactccttcctcatgcacacggcggcgggatccgaaggtggcggtcagtctctgaat
tcccccggttcttgtctggaggatttccgcgccacgccgttcatcgagtgcaacggagcc
aaggggtcctgccacttcttcgccaacgaatacagcttctggctcaccaccgtgcagccg
ggcacggagttcctctacgcccccggacaggagaccctgaagggcggccaggagagatcc
agagtcagccgctgccaagtctgcagcaagctgttgtag

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