Pseudochaenichthys georgianus (South Georgia icefish): 117464076
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Entry
117464076 CDS
T09629
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03020
RNA polymerase
pgeo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117464076 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
117464076 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117464076 (polr2a)
03400 DNA repair and recombination proteins [BR:
pgeo03400
]
117464076 (polr2a)
Enzymes [BR:
pgeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117464076 (polr2a)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117464076 (polr2a)
DNA repair and recombination proteins [BR:
pgeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117464076 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
VasI
Motif
Other DBs
NCBI-GeneID:
117464076
NCBI-ProteinID:
XP_033962495
LinkDB
All DBs
Position
18:complement(6945375..6958155)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRLSVTEGGIKYPETTEGGRPKMGGLMDPRQ
GVIDRSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKILRCVCFFCSKLLVDPT
NPKIKDILIKSKGQHRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQDAEEDLTKDKGHG
GCGRYQPRIKRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGLDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMIDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLHIDQVGVPRSIAANMTFPELVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPALLKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNHWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFRFDCTNERALRRMLQEDVVKDVLTNANVQSSLEKEYDRMKED
REVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINIRTPTDLNPLRVVEGLQDLSKKLVI
VNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAYDWLLGEIEAKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINSGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIDQISKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
NHVISFDGSYVNYRHLSLLCDTMTSRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHAENDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcatggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcaa
ttcggcatcatcagcccagatgagcttaaacggttgtccgttacggaggggggtatcaaa
taccccgaaacaacagaaggaggacgtcctaaaatgggtggccttatggaccccagacaa
ggggtcatagaccgatctgggagatgtcagacatgtgcaggcaacatgacggaatgccct
ggtcacttcgggcacatagaactggcaaagccagtcttccacgtcggcttcgtaacaaag
attatgaagattcttcgttgtgtctgcttcttttgctctaagcttctagtggatccaacc
aatccaaagatcaaagacatccttataaaatctaaagggcagcacagaaaacgtttgaca
catgtatacgagctgtgcaagggaaaaaacatctgtgaaggaggagaggagatggacaac
aagtttggaatggaacagcaggatgctgaggaggaccttaccaaggacaagggtcacggt
ggctgtgggcgttaccaaccccgcatcaaacgcaccggcttggagctgtacgccgagtgg
aagcacgttaacgaggattcacaggagaagaaaatcctgctgagtcctgaacgtgtgcac
gagatcttcaagcgcatctccgatgaagaagacgtcatcttgggcttggaccccaagttt
gcccgaccagagtggatgattgtaacggtgttacctgtgcctcccctggctgtcaggcct
gctgtcgtcatgcagggctctgctcgaaaccaggatgacttgacccacaagctggcggat
attgtcaaaatcaacaaccagctgagaagaaacgagcagagcggcgctgcggctcacgtc
atcgctgaggatgtcaaactgctccagtttcacgtagccaccatgattgacaacgagctg
ccaggcctgccaagggcaatgcaaaagtctggccgtcctctaaaatcccttaaacagcgc
ctaaaggggaaggagggccgagtccgaggtaacctcatgggtaagcgtgtggacttctcc
gcccgtaccgtcatcacgccagaccccaacctgcatatcgaccaagtaggcgtgcctcga
tccatcgcagccaacatgaccttcccagaactcgtcacaccctttaatatcgacagatta
caagagctggtacgaagaggcaacagccagtacccaggagccaaatacatcatccgggac
aacggagaccgaattgaccttcgatttcaccccaaaccaagtgaccttcacctgcagatc
ggctacaaggttgaaagacacatgtgtgacggcgacatcatcatcttcaacagacagcct
acactacataaaatgtccatgatggggcacagggtccgaatcctgccgtggtcaacgttt
cgactcaacctcagtgtaaccaccccatacaacgctgactttgacggagatgagatgaac
ctccacctgcctcagtccctggagacgagggctgaaatccaggagctggccatggtgccg
cgtatgatcgtcaccccccagtccaacaggcccgtcatgggtatcgtgcaggacaccctc
accgccgtgcgcaaattcaccaagagagacgttttcttagagaggggggaggtgatgaac
ctcctcatgttcctctccacctgggatggaaaggtgcctcagccggccctcctgaagccc
cgccctctgtggaccgggaagcagatcttcagcctaatcattcccggacacattaacgtg
atccgcacacacagcacccatcccgacgaggaggacagcggcccctacaagcacatctca
cccggggacaccaaggtcatagtggagaatggggagctgatcatgggcatcctgtgtaag
aagtccctgggaacctccgccggctccctcgtccacatctcgtacctggagatgggccac
gacatcaccagactcttctactccaacattcagactgtggtcaaccactggctgctcatc
gagggtgcttccattggtattggtgactccattgctgatgccaagacctacctcgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagcccacaac
aacgagctggagccgacccccggtaacactctgaggcagacctttgagaaccaggtgaat
cgtatcctgaacgacgctcgtgacaaaactggatcctccgcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggccgggtccaaaggctcaaagattaacatctcg
caggttatcgccgtggtggggcagcagaacgtggagggtaagcgaatccccttcggcttc
aaacaccgcacgctgcctcacttcatcaaggatgattacggtcctgagagcagaggcttc
gtggagaactcctacctggccggtctgacgcccactgagttcttcttccacgccatggga
ggccgagagggtcttatcgacacagccgtcaagacagctgagactggttacatccagcgt
cgtctgatcaagtccatggagtcggtgatggtgaagtacgacggcaccgtgcgcaactcc
atcaaccaggtggtgcagctgcgctacggagaggacggcctggcgggagagaacgtggag
tttcagaatgtggcaacgctcaaaccctcacacaaggccttcgagaagaagtttaggttt
gattgcaccaatgagcgagcgctgaggcggatgctgcaggaggacgtagttaaagacgtg
ttgaccaatgccaatgtgcagagctctttggagaaggagtatgacaggatgaaggaggac
agggaggtcctccgagccattttccccaccggggacagcaaggttgtgctgccatgcaac
ctggccagaatgatctggaacgctcagaagatcttccgcatcaacattcggaccccgaca
gacctcaaccctctgagggtggtcgagggacttcaagacttgagtaaaaagctggtgatc
gtgaacggcgatgacccgctcagtcgacaggcccagcagaacgccaccctgctcttcaac
atccacctgcgctccaccctctgctccaagcgcatgacggaggagttccgcctttccact
gaagcctacgactggctgctgggagagatcgaggccaaattcaaccagtccattgctcac
cctggagaaatggtgggcgctctggctgctcagtctctgggagagcccgccacccagatg
accctgaacactttccattacgccggtgtgtctgccaagaacgtaacactgggtgtgcct
cgtctaaaggagttgatcaacatctccaagaagcccaaaaccccctcgctgaccgtgttc
ctgctgggtcaggcggcccgtgacgccgagagggccaaagacatcctctgtaggctggag
cacaccacactgcggaaggtgacggccaacaccgccatctactacgaccccaacccccag
aacacggtggtggccgaggaccaggagtgggtgaacgtctactatgagatgcccgacttt
gacgtgacgcgcatctcaccgtggctgctgcgtatcgagctcgaccgcaagcacatgacc
gatcgcaagctgaccatggagcagatcgcagagaagatcaactcaggtttcggagatgac
ttgaactgcatcttcaatgacgacaatgcagagaagctcgttctgcgaatccgaatcatg
aacagcgacgagaacaagttccaagaggatgaggaggtggtggacaaaatggacgatgac
gtgttcttgaggtgcattgagtccaacatgctgactgacatgaccctgcaaggcattgac
cagatcagcaaggtgtacatgcacttgccccagactgacaacaagaagaagatcatcatc
acggaggaaggtgagttcaaggccctgcaagagtggatcctggagacggacggtgtgagc
ctcatgagggtcctcagcgagaaggacgtggatcccgtcaggaccacctccaacgacatc
gtggagatcttcacggtcttgggaattgaggcggtgcggaaggctctggagagggagttg
aaccacgtcatctcctttgacggttcctacgtcaactaccgccatttgtctctgctttgt
gacaccatgacctcccgcggtcatctgatggccatcacgcgtcacggcattaaccgtcaa
gacacgggaccgctcatgaagtgctcctttgaggaaacggtggatgtattgatggaggcg
tcctcccacgctgagaacgaccccatgaagggtgtgtcggagaacatcatgctcggccag
ctggccccatgtggtacaggatgcttcgatttgctgttggatgcggagaagtgtaaatac
ggcatggagatccctacaaacattcctggcatcagcgtggctggacctactggaatgttc
tttggcacagtgccgagtcccatgagcggtatgtcgcctgccatgaccccctggaacaca
ggagcgacccccgcctacggagcctggtcccccagcatcggaagcggcatgacccccgga
gcggcaggtttctctcccagcgcggcgtcagacgccagtggcttctctcccggctactcc
cccgcctggtctcccactcctggctctccggggtctccaggacctgccagcccctacatc
ccatctccaggtggagccatgtcacccaactactcccccacctcccccgcgtacgagcct
cgctcccccggaggctacaccccacagagccccggctactcccccacctccccctcctac
tcccccacgtctccctcttactccccgaccagccccaactacagccccacgtctccctcc
tactcccccacctcccccagttactcccccacctcccccagttactccccgacctctcca
tcctactctcccacgtctccctcctactcccccacctccccgtcttactccccaacatcc
ccctcctactcccccacctcacccagctacagcccgacgtcgccaagctacagcccgacg
tcacccagctactcccccacttcaccttcctactcccccacctccccctcttattctcca
acctctccatcttactccccgacctcaccgtcttactcccccacctccccttcctactcg
ccgaccagcccgagctacagcccgacatcgcccaactacacccccacctctcccagttac
tcccccacctctccctcttactctccaacatcgccctcctactccccgacctcccccaac
tacaccccgaccagccccaactactcccccacctccccctcgtactcccccacctctccg
tcctactcgccctccagtcctcgcttcacccctcagtctcccacctacacccccagctcc
ccctcatacagccccagctccccctcctactcccccacctccccaaaatatacccccacc
tccccctcgtacagccccagctccccggagtacacccccacctctccaaagtactccccc
acctcgccgaagtactccccaacatcgccgaagtactctcctacttcgcccacctactcc
ccgacgactccaaaatacagccccacctctcctacctactcccctacctcccccacgtac
acccctaccagccccaaatactccccgacctctcctacttactcccccacttcacccaag
tactcacccacgtctcctacctactcgccgactagtcccaaaggctccacgtactccccc
acctctccgggctacagccccacgtcgcccacctacagcccagccatcagccccgacgac
agcgacgaggagaacaactga
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