Pseudochaenichthys georgianus (South Georgia icefish): 117464346
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Entry
117464346 CDS
T09629
Symbol
ddb1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03420
Nucleotide excision repair
pgeo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117464346 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
117464346 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pgeo04121
]
117464346 (ddb1)
03400 DNA repair and recombination proteins [BR:
pgeo03400
]
117464346 (ddb1)
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
117464346 (ddb1)
DNA repair and recombination proteins [BR:
pgeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
117464346 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
117464346 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
117464346
NCBI-ProteinID:
XP_033962614
LinkDB
All DBs
Position
3:22863706..22917524
Genome browser
AA seq
1143 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACVTGHFTSADDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGESSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVGVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGKE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL
QESKALVSEWKEPQGRNISVAACNHTQVVLAVGRALYYLQILAGELKQISTMEMEHEVAC
LDITPLGEGGGESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRSVRGSVYQEVSQCFGVLSSRVEIQDVSGTTSAVRPSASTQALSSSVSSSKLFPSSTSP
HETSFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSMVSCRLGKDPSVYFIVGTAMVY
PEEAEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEK
ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPKWMSAV
EILDDDNFLWAENAFNLVVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNL
GESSTPHPGAVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFH
TERKTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELT
RIH
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtggtaacagcccagaaacctacggcggtgaacgcctgcgtcaca
ggtcacttcacctctgcggatgacctcaatctgctcatagctaaaaacacacggttggag
atctatgtggtcacagcagaggggctgcggcccgtcaaggaggtgggcatgtatgggaag
attgctgtcatggagctcttccggccaaagggtgagagcaaagacctgctgttcattctc
acatccaagtacaacgcctgcatcctggaatacaaacagaacggggagagcattgacatc
atcactcgcgcccatggaaatgtccaggatcgtatcggtcgtccgtcagaaaccggtatt
attggaattgtagacccagagtgccgtatgattggcctgcggctgtatgacgggttgttc
aaggtgatcccattggaccgggacaaccgtgagctcaaggccttcaacatcagactggag
gagctgcaggtcatcgatgttcacttcctgtacggctgccaggcccccaccgtctgcttc
atctaccaggacccccaggggcgccatgtgaagacctacgaggtttctctgagggagaag
gagttcaacaagggcccctggaaacaggagaatgtggaggcagaggcgtccatggtcatc
ccagtgccagagccatttggtggagctataatcataggacaagagtccatcacctaccac
aatggagacaaatacttggccattgccccacctactatcaagcaaagcaccatcgtctgt
cacaaccgggttgaccccaatggctcccgctacctgctcggggacatggaggggcggctg
tttatgctgctgctggagaaggaggagctgatggacggcacagtggcgctcaaagacctg
catgtggagctgctcggagagtcatccatcgctgagtgtttgacctacttggacaacggt
gtggtctttgtgggctccagactgggcgattcccagttggtgaagctcaacgtggacagc
aatgagcagggctcctatgtgggggtgatggagacgttcaccaatctggggcccatcgtg
gacatgtgtgtggtggacctggagagacagggccaaggccagctggtgacctgctcaggt
gcgttcaaggaagggtctctccgaatcattcgcaacggcattgggattcatgagcatgcc
agcatcgacctgccaggaatcaaaggtttgtggccactacgctccgaggcaggcaaagag
acagatgacatgctggtgctgtctttcgtgggtcagacgcgagtgttgatgctgagcggc
gaggaagtcgaggagacagaacttcccggctttgtggacaaccagcagacattttactgc
ggcaacgtggcgcaccaacaactcattcaaatcacgtcaggctcagtgcgcctggtgctc
caggagagcaaggcattagtgagcgaatggaaggagccacagggcaggaacatcagcgtg
gctgcctgcaaccacacccaggtggtgctcgccgtgggaagagccctctactacctgcag
atcctggctggagagctcaaacagatcagtaccatggagatggagcacgaggtggcctgc
ctggacatcacgcccctgggggagggtggcggtgagtcgccgctctgcgctgtgggactg
tggaccgacatctcagcccgggtcctcaaactgccctgcttcactgccctgcacaaggaa
atgctgggcggagaaatcatccctcgctcaatcctaatgaccaccttcgagggcagctac
tacctgctgtgtgcgctgggagacggggcactcttctactttggcctggacctgcagact
ggcgccctgagcgagcgcaagaaggtcacgctgggcacccagcccactgtgctgaggacc
ttcagatccctgtccacttccaacgtgttcgcctgctccgacagacccacagtcatctac
tcctccaaccacaagctggtgttctccaacgtcaacctcaaggaggtcaactacatgtgc
ccgctcaactctgagggctaccccgacagtctggctctggccaacaacagcactctgacc
atcggcaccatcgacgagattcagaaactccacattcgcaccgttcccctctacgagtcc
cccaggtcagtccgcggatctgtttaccaggaggtctcgcagtgttttggtgttttatcc
agcagggtggagattcaggatgtgagcggcaccacatctgccgtgcgccccagcgccagc
acccaggctctctccagcagcgtgagttccagcaagctctttcccagcagcacttctccc
cacgagacctcctttggtgaagaggtggaggttcacagtctgctggtggtggatcagcac
acctttgaagtcctccatgcccatcagttcctccccagcgagtatgccctcagcatggtg
tcatgtcgcctgggaaaagacccgtcagtgtattttatcgtcggcaccgccatggtgtac
ccagaggaggctgagcccaagcagggccgcatcattgtcttccactacactgacggtaag
ctgcaaactgtggctgagaaggaagtgaaaggagccgtctattctatggtggagttcaat
ggcaaactgttggccagcatcaatagcacagtccgtctgtacgagtggacggctgagaag
gagctgaggaccgagtgcaaccactacaacaacatcatggctctttacctgaagaccaaa
ggagacttcatcctggtgggagacctgatgaggtccgtcctgctgctggcctacaaaccc
atggagggcaactttgaagagattgcacgtgactttaatcctaagtggatgagtgctgtg
gaaatcctggatgatgacaacttcctgtgggcagagaacgccttcaatctggttgtctgc
cagaaggacagtgcggccaccacagacgaggagcggcagcacctgcaggaggtgggggtc
ttccacctcggggagtttgtaaatgtcttctgccacggctcgctggtgctgcagaacctg
ggcgagagctccaccccccacccaggggccgtgctctttggcaccgttaacgggatgatt
ggtctggtgacgtccctgtctgagggctggtacagtctcctcctggacctgcagaaccgc
ctcaacaaagtcatcaagagcgtggggaagatcgagcacagcttctggaggtccttccac
acagagcgcaagacagagcaggccacgggattcatcgacggagatctgatcgagagcttc
ctggatctcggtcgagccaagatgcaggaggtcgtcagcactctgcagatcgatgacggc
agcggcatgaagcgtgaggccacagtggacgaggtcattaagatagtggaggagctgacg
aggattcactaa
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