Pseudochaenichthys georgianus (South Georgia icefish): 117464555
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Entry
117464555 CDS
T09629
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117464555 (dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgeo03041
]
117464555 (dhx8)
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117464555 (dhx8)
Spliceosome [BR:
pgeo03041
]
Complex C
Other components
Step II factors
117464555 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
ABC_tran
nSTAND3
AAA_16
T2SSE
AAA_30
TsaE
PhoH
Sigma54_activ_2
AAA_7
Motif
Other DBs
NCBI-GeneID:
117464555
NCBI-ProteinID:
XP_071062941
LinkDB
All DBs
Position
19:10110353..10123748
Genome browser
AA seq
1099 aa
AA seq
DB search
MQSSPSTSNAHRPRGEKDELKEKYPALCKPDDPVWRIPPGNTARGDEQVAAAAMKELEML
MPNFCGTSSDNGSDQKLHSDGGQNTDRHVGGHRSRSPDRETIPKPKRKRRWSDNPPSPQK
DEDNNNQKDSRLRDTAVDRPPPEEPVVGDIYNGKISSIMQFGCFVQLEGLRKRWEGLVHI
SELRKEGRIANVADVVTKGQKVKAKVLSFTGTKASLSMKDVDQGTGEDLNPNRRRNLDPA
VGEEALRNPDRPVEAIVLDIDENPMERKRLSKITDLEKWEIKQMIAANVLPKEEFPEFDE
ETGILPKIDEDEDQELEIDLVDDEPPFLRGQTKWSANMSPVRIVKNPDGSLSQAAMMQSA
LAKERRELKQSVRAAELDSIPTGLHKNWVDPMPDYLGRQIAANMRGIGAMPADLPEWKRH
AFGGNQASYGQKTELSILQQRESLPIYKLKEQLVQAVHDNQILIVVGETGSGKTTQITQY
LAEAGYTARGKIGCTQPRRVAAMSVAKRVSEEYGCRLGQEVGYTIRFEDCTSIETVIKYM
THGMLQRECLLDPDMSQYTLIMLDEAHERTIHTDVLFGLLKKTIKKRKELKLIVSSATLD
AVKFSQYFCEAPIFTIPGRTFPVEVLYCKEPETDYLDASLITVMQIHLTEPPGDLLVFLT
GQEEIDTACEILYERMKSLGPNVPELIILPVYSALPSEMQTRIFDPAPPGSRKVIIATNI
AETSLTIHGIYYVVDPGFVKQIVYNSKTGIDQLVVTPISQAQAKQRSGRAGRTGPGKCYR
LYTERAYRDEMLTTNVPEIQRTSLASTVLSLKAMGINDLLAFDFMDAPPMETLILAMEQL
YTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNIFYRP
KDKQAQADQKKTKFFQLEGDHLTLLAVYNSWKNNKFSNPWCFENFVQARSLKRAQDIRKQ
MLSIMDRHKLDVVSCGKSTVRVQKAICSGYFRNSARKHPHDGYRTLIDQQVVYLHPSSTL
FNRQPEWLVYHELVLTTKEYMREVTTIDPRWLVEFAPAFYRVADPHRLSRQKKQLKLEPL
YNRYEEPNDWRISRAFRRR
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcttcaccatctacaagtaatgctcatcggccaaggggtgaaaaggacgagtta
aaagagaaatatcccgctctttgtaaaccagatgatcctgtgtggaggattccacccggc
aacacagctagaggcgatgagcaggtagcagcagccgccatgaaggagctggagatgctc
atgcctaacttctgtggaacaagctctgataatgggtcagaccaaaagttgcacagtgac
ggaggtcaaaacacagacagacatgttggtggtcatcgcagtcgttcgcctgacagagaa
acaatcccaaaaccaaaaaggaaacgtcggtggagtgacaatcctccgagtcctcagaaa
gacgaagacaacaacaaccagaaagactctcgcttgcgagatacagctgtagatcggcct
ccaccagaggagcccgttgtgggcgacatctacaacggaaaaatcagcagtattatgcag
tttggctgttttgtgcagctcgagggcctcaggaaacgctgggagggcctggtgcacatc
tcagagctgcgcaaagaaggacggatagccaatgtcgctgatgttgttaccaaaggccaa
aaggtgaaggctaaggtcctgtccttcactggaaccaaagccagccttagcatgaaggat
gtggaccaggggaccggagaggacctgaaccccaaccggagaagaaacctggaccctgcg
gtcggagaggaggctctgaggaacccagaccgccctgtggaggccatcgtgctggacata
gatgaaaaccccatggaacgcaaacgcctctccaagataactgaccttgagaaatgggaa
attaaacagatgattgcagccaacgtacttcctaaagaagagttcccggaatttgatgaa
gagacggggatccttcccaaaatagatgaagatgaagatcaagagctggagattgatctg
gtggatgacgaaccccccttcttgaggggacagacgaaatggagtgccaatatgagcccc
gtgaggatagtaaagaatcccgacggctccctctcgcaggcggccatgatgcagagcgcc
ctggctaaggagaggagagagctgaagcagtcggtccgcgctgcagagctggactccatc
cccaccggcctgcacaagaactgggtcgacccgatgcctgattatttaggaaggcagatt
gctgccaacatgagaggcatcggcgctatgcctgctgatcttccagagtggaaaagacat
gccttcggagggaaccaggcgtcgtacggccagaagacagagctctccatcctgcagcag
agagagagtctgcctatttacaagctcaaggaacagcttgttcaggctgtccacgacaat
cagatcttaattgtagtcggagaaacagggtctggtaagaccacacagatcactcagtac
ctggcggaggccggctacaccgcccgggggaagatcggctgcacgcagccccgccgtgtg
gccgccatgtccgtggccaagagggtctctgaggagtacggctgccgtttaggccaagag
gttggttacaccattcgatttgaggactgcaccagtatagaaacagtgatcaagtacatg
acccacggcatgctgcagagggagtgcctgctggacccagacatgagtcagtataccctc
atcatgctggatgaggcccatgagagaacaatccacactgatgtgctctttggtcttctc
aagaagaccataaaaaagcgcaaagagctgaagctgattgtgtcctctgctacactggat
gccgtgaagttctctcagtatttctgtgaagcgcccatcttcaccatcccaggaagaacg
ttcccagtggaggttctgtactgcaaggagcctgagacggactacctggatgccagtctc
atcactgtcatgcagatccatctgactgaacctccaggagacctcctggtgtttctgacg
ggacaggaagagatcgacactgcttgtgagatcctgtacgagagaatgaagtccctgggg
ccgaatgttcctgaactgataattctgccagtttattctgcgctgcccagtgagatgcag
accaggatctttgaccccgcaccccccggcagcagaaaggtcatcattgccactaacatt
gcagagacatctcttactatccatggaatctactacgtggtggaccctggctttgttaaa
cagatcgtttataactcaaagaccggcatcgaccagcttgttgtgactcccatatcacag
gcgcaggccaagcagcggtctgggcgggcgggcaggacgggtccggggaagtgttaccgg
ctctacactgagagggcctacagagacgagatgctgaccaccaacgtgccggagatccag
agaaccagcttagccagcacggtgctctccctgaaggccatgggcatcaacgacctcctg
gcttttgacttcatggacgctcctcccatggagacgctgatcctcgccatggagcagctg
tacactctgggagcgctggatgatgaaggcttactcacacggctgggaagaaggatggcg
gagtttcctctggagcccatgctgtgtaagatgttgatcatgtccgtccatctgggctgc
agtgaagagatgctcaccattgtctccatgctgtctgtgcagaacatcttctacagacct
aaggacaaacaggcccaggctgaccagaaaaagacaaagttcttccagctggagggagac
cacctgaccctgctggctgtctacaactcctggaagaacaacaagttctccaacccctgg
tgtttcgagaacttcgtccaggctcgctccttaaagagagcccaggacatccgcaagcag
atgctgagcatcatggaccgacacaagctggacgtggtatcttgtggaaaatctacagtg
cgggtccagaaagccatctgcagcggttacttcaggaacagtgccaggaagcacccccat
gatggctaccgtaccctgatcgaccagcaggtggtgtacctccacccctccagcaccctc
ttcaaccgccagcctgagtggcttgtgtaccatgagttggtgctgacgaccaaggagtac
atgcgggaggtgaccaccatcgacccccgctggctggtggagttcgccccagcgttctac
agagtggccgaccctcatcgcctcagccggcagaagaagcagctgaaactggagcctctg
tacaaccgctacgaggagcccaacgactggagaatctcccgcgccttcagacgacgctga
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integrated database retrieval system
