Pseudochaenichthys georgianus (South Georgia icefish): 117464644
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Entry
117464644 CDS
T09629
Symbol
polr3a
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03020
RNA polymerase
pgeo04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117464644 (polr3a)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
117464644 (polr3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117464644 (polr3a)
Enzymes [BR:
pgeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117464644 (polr3a)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
117464644 (polr3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3654
Motif
Other DBs
NCBI-GeneID:
117464644
NCBI-ProteinID:
XP_033963068
LinkDB
All DBs
Position
19:complement(16595788..16639887)
Genome browser
AA seq
1390 aa
AA seq
DB search
MVKEQFRETDVAKKISHICFGMKSAEQMRKQAHIQVVSKNLYSQDTKHTPLAYGVLDHRM
GTSEKDRPCLTCGKNLADCLGHYGYLDLELPCFHVGYFKAIIGILQMICKTCSSIMLTKE
DKLLFMDMLKRPNLAYLQKRGLKKKISDKCRKKTICMSCAAFNGPVKKCGLLKIIHEKYK
TNKKVVDVFVTDFLQSFDTAIEHNKVVEPLLTRAQENLNPLVVLNMFKRIPQEDIPLLLM
NPEAGKPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANLELLRKLVRNGPEVHPGANF
IQNRSTQMKRFLKYGNREKIAQELRFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARI
RPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANFVTPRNGEPLIA
AIQDFLTGAYLLTLKDTFFERSKTCQLVASILVGHDEKVKITLPRPAIMKPMALWTGKQI
FSLILKPNKECPVKANLRTRGKQYCGKGEDLCYNDSFVVIHNSELMCGSLDKGTLGSGSK
KNIFYILLRDWGQLEAANAMSRLARLTPAYLSNRGFSIGIGDVTPGQGLLKAKQDLLDDG
YKKCDEYIQALSTGKLQQQPGCTAEETLEALILKELSVIRDRAGSACLRELDKSNSPLVM
ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYS
GLTPTEFFFHTMAGREGLVDTAVKTAETGSMQRRLVKSLEDLCSQYDLTVRSSTXDIIQF
IYGGDGLDPTDMEGKDEPLEFQRVLDNIRAIYACPKEPALSQNELVLTADAIMKRTDFLC
CKDVFLEEIRKFAKNISERIKKTRDKYGINDNGTSEPKVLYQLDRITPTQLEKFLETCRN
KYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNI
STPIITAHLDVDEDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLL
RLEVNAETVRYSICMSKLRVKPGDIAVHGEAVVCVSPRENNKSSMYYVLQQLKGELPKVV
VQGIPEVSRAVIHIDEQSTKTMYKLLVEGDNLRAVMATHGVKGSKTTSNNTYEVEKTLGI
EAARSTIINEIQYTMSNHGMSIDRRHVMLLGDLMSYKGEILGITRFGLAKMKESVLMLAS
FEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKAEKDPSPVKRPLLFD
NADFHIPLIT
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggaacagttcagagagacagatgtggccaaaaaaataagccacatctgcttt
ggcatgaaatctgctgaacagatgcggaagcaggcccacatccaggtggtcagtaagaat
ctgtacagccaagacaccaaacacactccactggcctatggagtgttggaccaccgtatg
ggcaccagtgagaaagacagaccgtgtttgacatgtgggaagaatctggcagactgcttg
ggacattatggttacctggatctggagctgccatgttttcatgtcggctattttaaagcc
atcataggaatcttacagatgatctgcaagacatgctcgagcataatgctgacaaaagag
gacaaactgctgttcatggatatgttaaaaaggcccaacctggcctatctccagaaacga
gggttgaagaagaagatctctgataaatgccgcaaaaagacgatctgtatgagttgtgct
gctttcaatggaccagtgaaaaaatgcggcctgctaaagatcatccatgagaagtacaaa
accaacaagaaggtggtggatgtctttgtgacagattttctgcagtccttcgacactgcc
attgagcacaacaaagtggtggaacctctgctgaccagagcacaggaaaacctgaaccct
ctggtggtgctgaacatgttcaagaggatcccccaagaagacattcccctgctgctgatg
aaccctgaggcagggaaacccgcggacctcattctcacccgcctcctggtgccccctctc
tgcatccggccctctgtggtcagcgacctgaagtccggcaccaacgaggacgacctcacc
atgaagctcacagagataatcttcctcaacgatgtcatcaaaaagcaccgtatgacaggg
gcgaagacccagatgatcatggaggactgggacttcctccagctgcagtgtgcgctgtac
atcaacagcgagctctcgggcattcccctcaacatggcaccgaagaaatggacccgaggc
tttgtgcagagactcaagggaaagcaaggtcgattcagaggaaacctctcgggaaaaaga
gtggacttctctggcagaaccgtcatttctcccgacccaaacctgaggatagatgaggtg
gccgtccccgtgcacgtggctaaaatcctgacatacccagagaaggtgaacaaagccaat
ctggagctattgaggaaactggtccgcaacgggcctgaagttcatcccggagccaacttc
atccagaatcgtagcacacagatgaaaaggtttttaaagtatggaaaccgtgagaagata
gctcaggagctgaggttcggagatgtggtggaaagacacatgatcgatggagacatcgtc
ctcttcaatcgacagccctccctgcacaaactcagcatcatggcccacatcgccagaatc
agacctcacaggacgtttcggttcaacgagtgcgtgtgcaccccgtacaatgccgacttt
gacggtgatgagatgaaccttcatctacctcagactgaagaagccaaagccgaggccctc
gtcctgatggggacgaaagcaaattttgtcactccaagaaatggtgaacctctgattgct
gctattcaggactttctgacaggggcctacctcttgacgctgaaggacaccttctttgag
agatcaaagacctgccagcttgtggcatcgatcctcgtggggcatgacgagaaagtaaaa
atcactctcccccgccctgctatcatgaagcccatggctctgtggacgggcaagcagatc
ttcagcctcattctgaagcccaataaggaatgtccagtgaaggccaacctgcggaccagg
ggcaagcagtactgcggcaagggagaggatctctgttacaacgactcattcgtggtgatc
cacaacagtgagctaatgtgcggcagcctggacaagggtaccttggggtccggctccaag
aagaacatcttctacatcctgctgagagactggggacagctggaggcggcgaacgccatg
tcccgcctggccagactcactccggcgtatctctccaaccgaggcttctctattggtatt
ggtgatgtgacacctggccagggtctgctgaaggccaaacaggacctgctggatgatggg
tacaagaagtgtgacgaatacatccaggcgctatccacgggcaaactgcagcagcagccc
ggctgcacagcagaggagactctggaggctctcattttgaaagagctgtccgtcatcaga
gaccgagcgggcagcgcctgcctcagggagctcgacaagagcaacagccctctggtcatg
gctctctgcggctccaaagggtctttcattaatatctctcagatgattgcctgtgtgggc
cagcaggccataagtggctctcgagtccctgacggttttgagaatcgctccctgcctcac
tttgaaaagcactccaaactgcctgctgctaaaggctttgtggctgacagcttctactcc
ggcctgacccccacagagtttttcttccacaccatggctggccgagagggtctggtggac
actgctgtaaagactgcagagaccggatctatgcagaggcgtctggtgaagtccctggaa
gatctgtgctcacagtacgacctgacagtacgcagctccaccngcgacatcatccagttt
atttatggcggcgatggtctcgacccaaccgacatggaggggaaagacgagccgctggag
tttcagagagtcctagacaacatccgggcgatctatgcgtgtccaaaggagcccgcgctc
agtcagaacgagctggtcctcacagctgatgccatcatgaagagaaccgacttcctgtgc
tgcaaagacgtcttcctggaggagataaggaaatttgcgaagaacatctcagaacggatc
aaaaagaccagagacaaatacggcatcaacgacaatggcaccagcgagccaaaagtgctt
tatcagctggaccgcataacccccacccagctggagaagttccttgaaacctgcaggaac
aagtacatgagagctcagatggagccgggctcagcggtgggagctctttgtgcccagagc
atcggagagcccggcactcagatgaccctgaagaccttccacttcgccggtgtggcgtcc
atgaacatcactctgggggtgcctcgcatcaaagagatcatcaatgcatcaaagaacatc
agcacccctataatcacggctcatttggatgtggacgaagacgctgactttgcccggctg
gtgaaggggagaatcgagaaaacacttctaggagagatatccgagtacatagaagaggtt
tttctacccgacgactgcttcatcctggtgaaactgtcccttgagagaataaggctgctg
cgcctggaggtaaatgcggaaacagtgcgttactccatctgcatgtccaaactccgggtg
aagccgggagacatcgctgtgcacggcgaggcggtggtgtgtgtgtctccgcgagaaaac
aacaaaagctccatgtactacgtgctgcagcaattaaaaggggaacttcctaaggtggtg
gttcaagggatacctgaagtttcccgagctgtgattcacatcgacgaacagagcaccaag
accatgtacaagctcctggtggagggggacaacctgagggctgtcatggcaacgcatgga
gtgaaaggaagcaagactacttcaaacaacacatatgaggtggagaagactttgggtatt
gaggcggccagatccaccatcataaatgagattcagtacactatgtcgaaccatggaatg
agcattgaccggcgccacgtcatgcttctaggagatctcatgtcctacaagggggagata
ctgggaatcaccaggtttggtttagccaaaatgaaggagagtgtcctcatgctggcctcc
ttcgagaaaacagctgatcatctcttcgatgccgcgtacttcggacaaaaggactcagtc
tgtggtgtgtctgagtgtatcatcatggggatcccaatgaacatcggaacaggactgttc
aaactgctccacaaggctgagaaggatccctctccagtcaaaaggcctctcctctttgac
aatgcagacttccatataccgctgatcacatag
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integrated database retrieval system
