Pseudochaenichthys georgianus (South Georgia icefish): 117464687
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Entry
117464687 CDS
T09629
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117464687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgeo03041
]
117464687
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117464687
Spliceosome [BR:
pgeo03041
]
Complex C
Other components
Step II factors
117464687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
GIPC1_GH2
nSTAND3
T2SSE
AAA_16
PhoH
Flavi_DEAD
TsaE
ABC_tran
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
117464687
NCBI-ProteinID:
XP_033963149
LinkDB
All DBs
Position
19:complement(9540990..9562617)
Genome browser
AA seq
1222 aa
AA seq
DB search
MADGGVDELSQLEYLSLVSKVCTELDNHLGISDKDLAEFVIDLAEKQPVFDGFKALLLQN
GAEFTDSLIGNLLRLIQTMRPPSKASMSKATEALAKPKTEKDKLKELFPALCRANEPVPK
KILDEDDVKVAADVMKELEMFMPSVSGTETKSSKSRSEKSRRQSRSRSRSRDRDRHRDRD
RDHDRDRDRDRKRRHRSRSRSRSRDHDRHRDRDREGDRGKRRDKSVRRSERSPSPKKDQD
KDKDSERWQDKHVDRPPPEEPSVGDIYNGKITSIMQFGCFVQLEGLRKRWEGLVHISELR
REGRVANVADVVSKGQRVKIKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNVGPDGGDE
ISMRNPDRPSNLNLNLGHVPEMEQDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPD
FDDETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMM
QSALAKERRELKQAAREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPNDIPEW
KKHAFGGNKASYGKKTAMSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQI
TQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVI
KYMTDGMLLRECLIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVMKRTDMKLIVTSA
TLDAVKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDVLV
FLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIA
TNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGK
TYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAM
EQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF
YRPKDKQALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRGQDI
RKQMLGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPS
SALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRL
EPLYNRYEEPNAWRISRAFRRR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgggggagttgacgagctttcgcagcttgaatatttgtcgttggtgtccaag
gtctgcacggagcttgacaaccatttggggataagtgataaagatttagctgaatttgtc
atcgaccttgctgaaaaacagccggtgttcgatggctttaaagctcttttgctccaaaat
ggagccgaattcacagattctctcatcggtaatttgctcaggctcatccagacaatgcgt
cctccatcgaaagcatctatgagtaaagcaactgaagctttggccaagccgaagacagaa
aaggacaagctgaaagagctgtttcctgcgttgtgtagagcaaatgagccagtgccaaag
aagatacttgacgaagatgatgtgaaagtagctgctgatgtcatgaaagagctggagatg
tttatgcccagtgtgagtggaacagaaaccaaaagcagcaagagcaggtcagaaaagagc
agacgccaaagccgaagtcgcagcagaagcagagaccgggacagacacagagatagagac
cgggatcacgacagagaccgggatcgggacaggaagagacggcatcgctcaaggtccagg
tcgcgctccagagaccacgatcgccaccgagatagagatagagaaggagatcgtggaaaa
agaagagacaaatctgtccgcaggtctgagcgctcacctagtcccaagaaagaccaagac
aaagacaaagactctgagcgctggcaagacaaacacgtggaccgcccaccacctgaggag
ccttctgtcggtgacatatacaacggcaaaatcaccagtatcatgcagtttggatgcttt
gttcagctggagggactacggaaacgatgggaggggttggtccatatctccgagctgcgc
cgagagggccgtgtggccaacgttgctgatgttgtcagcaaaggccaaagagtcaagatc
aaggtgctctcattcaccggctccaagaccagccttagtatgaaggatgtggaccaggag
acaggagaagacctgaaccccaacaggaggaggaatgtgggccctgatggaggggatgag
atctcaatgaggaaccccgaccggccaagcaacctgaacctcaacctgggccacgtcccc
gaaatggagcaggacgacaccctggagcgcaagaggctcaccaagatctctgacccggag
aagtgggagatcaaacagatgattgctgccaatgtcttgtctaaagaagagttccctgat
tttgatgacgagacaggaattcttcctaaagttgatgatgaagaggatgaagatttggaa
attgagctggttgaagaagaacccccattcctgaggggacacaccaagcagagcatggac
atgagccctgtcaagattgtcaagaatccagatggctctctgtctcaagcggccatgatg
cagagcgctctggctaaggagaggcgggagctgaagcaggcggcgcgggaggcagagatg
gactccatccccatggggctgaataaacattgggtggacccgctgccagacgttgacggc
aggcagattgcagctaacatgagaggtattggcatgatgcctaacgacatcccagagtgg
aagaagcatgcctttggaggcaacaaggcctcctatggtaagaagaccgcgatgtccatc
ctggagcagagggagagtctgcccatctacaagctgaaggagcagctcattcaggctgtt
catgacaaccagatcctgattgtgattggagagacagggtccggtaagaccacgcagatc
actcagtacctggcagaggccggctacaccaccagggggaagatcggctgcacgcagccc
cgtcgtgtggccgccatgtccgtggccaagagggtctctgaggagtacggctgctgtcta
ggacaagaggtaggttacaccatccgtttcgaggactgcaccagccctgagacagtcatc
aagtacatgacggacggtatgctgctgagagagtgtctcatcgattctgagctgggccag
tacgccatcatcatgttggacgaagctcacgagaggacaatccacactgatgtgcttttt
ggtttgctcaagaagactgtaatgaaacgcacagacatgaagctgatcgtaacatcagcc
acactggacgccgtgaagttctctcagtatttctatgaagcgcccatcttcaccatccca
ggaagaacttacccagtggaggttctctacaccaaggagcctgagacggactacctggat
gccagtctcatcactgtcatgcagatccatctgactgaacctccaggggacgtcctggtg
tttctgacgggacaggaagagatcgacactgcttgtgagatcctgtacgagagaatgaag
tccctgggtcccgatgttcctgaactgatcattctgccagtctattctgccctgcccagt
gagatgcagaccaggatctttgaccctgcaccccccggcagcagaaaggttgtcattgcc
acaaacattgcagagacatctctgaccatcgatggaatctactacgtggtggatcctggc
tttgtgaagcagaaagtgtacaactcaaagaccggcatcgaccagctggtggtgacaccc
atctcacaggcgcaggccaagcagagggcgggtcgagccggcaggacgggccccgggaag
acctacaggctctacactgagagggcctacagggacgagatgctgaccaccaacgtgccg
gagatccagagaaccaacttggccagtactgtgctctctctgaaggccatgggcatcaac
gacctcctgtcctttgacttcatggacgctcctcccatggagacgctgatcacagctatg
gagcagctgtacactctgggagcgctggatgatgaaggcctactcacacgcctggggaga
cggatggcggagtttcctctggagcccatgctgtgtaagatgctgatcatgtccgtccat
ctgggctgcagtgaagagatgctcaccatcgtctccatgctgtctgtgcagaacgtcttc
tacagacctaaggacaagcaggccttggctgaccagaagaaggcgaagtttcaccagcct
gagggagaccacctgaccctgctggctgtctacaactcctggaagaacaacaagttctcc
aacccctggtgttatgagaacttcatccaggctcgctccctgcgcagaggccaggacatc
cgcaagcagatgctgggtatcatggacagacataaactggacgtggtatcttgtggtaaa
gccacagtccgggtccagaaagccatctgcagtggcttcttcaggaacgccgccaaaaag
gatcctcaggagggttaccgcacccttatagaccaacaagttgtttacatccacccctcc
agtgctctgttcaaccgccagcctgagtgggttgtgtaccatgagttggtgctgaccacc
aaggagtacatgcgggaggtgaccaccatcgacccccgctggctggtggagttttctcca
gccttcttcaaagtgtcagatcccacgcgcctcagcaagcagaagaaacaacagcgcctc
gagcctctgtacaaccgctacgaggaacccaacgcctggagaatctcccgagcctttagg
cgccgttag
DBGET
integrated database retrieval system
