Pseudochaenichthys georgianus (South Georgia icefish): 117464973
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Entry
117464973 CDS
T09629
Symbol
nlrc3
Name
(RefSeq) NLR family CARD domain-containing protein 3 isoform X1
KO
K22614
NLR family CARD domain-containing protein 3
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pgeo04054
]
117464973 (nlrc3)
Pattern recognition receptors [BR:
pgeo04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117464973 (nlrc3)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_6
NACHT
NLRC4_HD2
NOD2_WH
CARD
AAA_16
AAA_33
LRR_12
Motif
Other DBs
NCBI-GeneID:
117464973
NCBI-ProteinID:
XP_033963678
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All DBs
Position
19:22127848..22143326
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AA seq
1134 aa
AA seq
DB search
MERRAHYDSILDRSKRITWQDDCYVDLQSTPCSVSSKAETEELGWIQKHQDQLQRFITTS
FLEEMMTHLRKMDVLNSAEETKVKEAGRLQDQVNMFTSIVSAKDSQGSDALRAFVQSSDS
QVAQLIINHESMVKEHKEALRRRHEQYRDRDSIICPKLNISSRTLLLVDGLSDIQQKEHD
LMQVGATRGRKRNHLRQLGLTKLLEPLTRVSLPPRVSLTVGVAGIGKTTWVRHFLRQWSQ
GAICTDVSFILPFTFCELNSLEKVSAERLVKMAFPHLTDPGLVLSSSCRTLLILDGLDEF
RCTLNFSDAAPCSDPKKEVSIDDLVTNIIRGNLLPDVAVWVTSRPGVASLIPGGLVDRVT
EIPGFSSKDIQLFLNHHFSERDFSSKIWAHLESNKILMVMCYIPCISWIVADTLMYIMQS
ETQESLPRTCTELYAHFCSMKAEVGEPRGREPVKMEQLHGTNRKLLGNLGRLAFYGLLKH
KYTFSEQDLRAYGIDLLLTQCSLGAGVLVREESALSTTYRFTHLTLQEFLAATFYHISSK
RALFDLFSESTMSWPKIGFQNHFKSAFQHSQQAEDGHLDVFVRFLTGLLCPAAIKPLAGL
LALGKDDGNQKAWAAGFLQGLLVSGGAVVSLRSVNLAYCLQELQHTELLRSVEEDLQLGS
LAGKLTRAHCVVLGYLLHVSAECSEQTNLTGSLNYATVKCLLPQLLYCSFLRLENNHFKD
DVMELLGSLLSAKDCHIQKISLAENAISNKGAKALSRALLVNRTLTSLNLRNNNIGSKGA
KFLAEALKMNQVLVSINFQNNSIEEEGAQALAEVLHCNRKLVSLNLRKNMVGAGGAKRIA
EALKTNRTLTKLILCSNQLGDKGTVALAEALTVNHTLLSLQLQSNSISNKGMTALTKALR
LNRGLVSLNLRENSIGVEGAKNMALALHENNSLQDLDLTANLLHDEGVQAIAGAIKVNRG
LTSLHLQWNFIKCSATKALANALLTNATIQLLDLQENAIGNEGVVFLAEALKTNMSLRTL
CLQGVSASTSGALAMAEALMRNQTLQTLDLRGNSVGMEGAKALANALKSNRSLKSLNLQE
NSLGMDGAIFIATALKGNHQLTYINLQGNGIGESGAKVISDAIRADAPGCVVDI
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggagaggagggcccactacgattctatcctggatcgaagcaaacgcatcacgtggcag
gacgactgctacgtggaccttcaatcgacaccctgctccgtctcttcaaaagcagaaaca
gaggaacttggctggatccaaaagcaccaagaccagctgcaacgcttcatcacaacctcc
ttcctggaggagatgatgacacacctgagaaagatggatgtgttgaattcagctgaagag
acgaaggtcaaggaggcaggccggctgcaggatcaggtaaacatgttcacatccatcgtc
tctgccaaggactctcaaggctctgacgctctgcgggccttcgttcagagctcagactct
caggtggcccagctcatcatcaaccacgaatccatggtgaaggagcacaaagaggcactc
cgacgacgacacgagcagtacagagaccgagattcaatcatctgccccaaactgaacatc
tcctccaggacattacttctggttgatggactttccgacatacagcagaaagaacacgac
ttaatgcaggtcggggcgactcgaggaaggaagagaaatcatctcagacagcttgggctg
accaaactcttggagcctttgacccgggttagtttacccccgcgggtctccctcacagtc
ggggtggctggtatcggcaagacaacctgggtccgacacttcctccgacagtggagccaa
ggagccatctgcaccgatgtgagcttcatcttgcctttcactttttgcgagctgaactcc
ctggagaaagtctctgctgagaggctggtgaaaatggcttttcctcatctaacggacccc
ggtctggtcctgagcagctcctgccgcacactgctcattctcgatggtttggacgaattt
cgctgcaccttaaatttctccgatgcagctccttgcagtgacccaaagaaagaagtgtcc
atcgatgacctggtgactaacatcatccgggggaatctgctccctgacgtagcggtgtgg
gtgacctccaggcctggggtggcctcactaatccccggaggattggttgacagggtgact
gaaatcccaggattcagctcaaaggacatccagctcttcctaaaccaccacttctccgag
agggatttttccagtaagatctgggcgcacttggagtccaataagatcctaatggtgatg
tgctacataccttgcatttcgtggatagtagcagacactctgatgtacatcatgcagagt
gaaacacaggaaagcctccccaggacgtgtaccgaactctacgctcacttttgttccatg
aaggcagaagtaggtgagccaaggggccgggagccagtgaaaatggagcagcttcacggg
actaatcgcaaactgctgggaaaccttgggcgtctggcgttttacgggctcctcaaacac
aagtacaccttcagcgagcaggacctccgggcctacgggatagacctgctgttgacccag
tgcagtctgggggctggagttcttgttcgggaggagtcggccttgtccacgacataccgc
ttcactcacttgaccctacaggagtttcttgcagctactttctaccacatctcctccaag
cgggcactctttgacttattctcagagagcaccatgtcttggcccaagatcggtttccag
aaccacttcaaaagcgccttccagcactcgcagcaggcggaggacggtcacctggacgtg
tttgtgcgcttcctgacaggcctgctgtgtccggcggcaataaagcctctcgctgggctg
ctggccctcgggaaggacgatgggaaccagaaggcgtgggcagcggggtttctacagggt
ctgttggtcagtgggggggcggtggtgtccctgcggtcggtcaacctggcttattgttta
caggagctgcagcacacagagctgctgcggagcgtggaggaagacttgcagctgggcagc
ctggcagggaagctaactcgcgctcactgtgtggtgctgggctacctgctgcatgtgtcg
gcagagtgcagcgagcagaccaacctcaccggctccctgaactacgccacggtcaaatgt
ttgctcccacagctgctgtactgcagctttctcaggttggagaacaatcactttaaagat
gatgttatggagctgctgggaagcctcctaagtgctaaagactgccatattcagaaaata
agtttggcagagaatgccatcagcaacaaaggtgccaaagctctgagtcgagcgctcttg
gtgaaccggacgctaacgtctctcaatctccggaacaacaacatcggctctaaaggtgca
aagttccttgcagaggctctaaaaatgaaccaagtcctggtatcaatcaacttccagaac
aattccattgaagaggaaggggctcaggctctcgcagaagtgctgcattgcaaccgcaaa
ctggtatctctgaacttacggaagaacatggttggagctggaggagccaaaaggattgca
gaggcgctgaagacaaaccggaccctcacaaaactgattctttgtagtaaccagctcggg
gacaaaggaacagtggctctcgccgaggctctgacagtgaaccacacgctgctgtcgctg
caacttcagagtaactccatcagcaacaaggggatgacggcgttaaccaaagcgctccgg
ctaaaccgtggtctggtctccttgaatttgagggagaactccattggggtcgagggggcg
aagaacatggccctcgccctccatgagaacaactcgcttcaggacctcgatctcacagcc
aacctcctgcacgatgaaggggttcaagctatagctggtgcgatcaaagtgaatcgaggc
ctcacctctctgcatctccagtggaatttcatcaagtgctctgccactaaagctctggcc
aacgctctcctcactaatgccacaattcagctcttggatctacaggagaacgctatcggg
aatgaaggcgtcgtctttcttgccgaagccttgaaaaccaacatgtctctgcgtacattg
tgtctccagggagtctcagcgagcacaagtggcgccctggcaatggcggaggctctaatg
agaaaccaaactctgcaaacactggatctacgagggaacagcgtggggatggagggagcg
aaggctctggccaacgcactgaaaagcaacagaagcctcaagtctttgaatctgcaggag
aactctctgggtatggatggagccatattcattgcaacagccttgaaaggaaaccaccaa
ttgacgtacatcaatctgcaggggaatggcattggggaatcgggagcaaaggtcatctca
gacgctatacgagccgacgcaccgggctgtgtggtcgacatctga
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