Pseudochaenichthys georgianus (South Georgia icefish): 117464993
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Entry
117464993 CDS
T09629
Symbol
abca5
Name
(RefSeq) cholesterol transporter ABCA5 isoform X1
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117464993 (abca5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pgeo02000
]
117464993 (abca5)
Transporters [BR:
pgeo02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
117464993 (abca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_23
AAA_29
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
117464993
NCBI-ProteinID:
XP_033963704
LinkDB
All DBs
Position
19:6076431..6106900
Genome browser
AA seq
1676 aa
AA seq
DB search
MYFIPEASITETTSRPYVIQMRHAGSMQPVYRRDAGVWHQTRSLLYKNLLIKWRTKQQSL
QELILPLLLLGLLILISTLNPHVYYGGISTMDLEREDHFFKGLGYTPITNITNHIMEEVA
QEMHMQDHLEMFASEEDLENASLYEPSSYVGVVFLDSSATSYRLRFPYNQLPFPSDYTES
IANCFTSSVNCRAANYWYSGFIRLQSLIDAAIIQMQTKRSVRSEMDLSVVMMGQPGSVEV
QKFPHALISIYLVLAFTPFVTFLIVNVAAEKEHRLKDTMTMMGLYDTAFWLSWGLLYAAL
VTTMSFLMSIIATYTALFPNSDFLVIFLLIFLYGISSIFFSFMMTPLFKKPKFASTVGSM
LTVVFGCLSLFTVLLKDFPQPLVWLLCLLSPSAFSIGIAQVVYLEAQGDGAVFSSLANGP
HPLYVPLFMLVVDCILYLLLAVYLDQVLPGDFGMKRSLVYFLKPSYWSKRRKRYVEVSSV
YDAEVKGTSGGDEHVEPISPEFRGKEAIRINNIHKVYKEKDSVVEALRGLTFDIYEGQIT
ALLGHSGAGKSTLMNILCGICTPTSGSATIYGSPVAEIADGSEMKQLVGICPQFNIIFDV
LTVEEHLRMFAAIKGILPSDIDAEVTKVLKDLDLEKIATAQAKNLSGGQKRKLSVGIAIL
GDPKILLLDEPTAGMDPCSRHQVWTLLKKRRAGRVTVLSTHYMDEADILADRKAVISQGQ
LKCVGSSLYLKVKCGVGYHLRMSINEGCEAEKITSLVKQHVTKAKLSRQHDAELTFTLPL
EGMDMFSGLFSEIDCQPNLGIINYGVSMTTLEDVFLRLEAETEIDQADYSVFNREQAEEE
GDDASLDNTDQQLLTFSDNKSDVVSGHALWRQQFSTVAWLHMLNMRRERKAFIYTLSLFL
VFVAAVLVLSLATGNIQIHSSERQFLPIYLLNKNAMPHRYSTGLLVQNSSGSDISDFIHN
LESQDLKVDLMKHGDYMAAAPHSAAINVTGSSKGFRYSVAFNSTTVHSLPMAVNVLSNAF
LRGLNGTGRIRTWTKPFDYQMPDATSYALVYIEAIILGMLAAGMPAYFAMDHTRDREIKC
RSTLRISGLVPSAYWCGQAAVDIPFYYLILSGMTMVLFSFNTGNLLTSSNLTSVVLCTVG
FGPAMILFSYVCSFGFARVQSNRDFFSVISMMVCVVSASLVQLSFVNDSPELTRNLHNAL
CFFNPLYPLMGCLNCITKSTFLPSLYESNFLWKNLLIAVVAPYLQCVLLLFLLRWLEIRY
GGRTIGSISSKSKPRLDKHIEEGLNEDEDVRMEKARVKEALTCQSCEEKPAVVVSNLSKQ
YKGKREGFSLNKGRKEATKNISFCVRKGEVLGLLGPNGSGKSTIMHMLSGDTDPTSGQVL
MGDYSTEFRPVENPLEHVGYCPQVNPLWPRITLQEHLEIYAAIKGLKGHNVPDIIKRVAN
ALELKDHLNKQTKTLSAGLKRKLCFALSMIGNPQIVLLDEPSSGMDPKSKQRMWRAIRAA
FKNRQRGAILTTHYMEEAEAVCDRVAIMVSGQLRCIGSIQHLKGKYGRGYSLEVKLREEL
TGLQPVALLHKEILRIFPHAARQESFATLMVYKIPTEDVKSLAMAFSQLESAKQNFNFED
YNFSQSTLEQVFMEFAKEQESEEEEVGSLSTTFQWQRLRQDGSVPATHPDSIVHQL
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgtattttatacctgaggctagcattacggagacaacttctcgtccgtacgtcatccag
atgaggcatgctggaagtatgcagcctgtatatagaagagatgcaggagtctggcaccaa
acgagaagtcttctctacaaaaatctgctcatcaaatggaggaccaagcagcagagtctc
caggaactgatcctacctctgcttctgttgggtcttctgatactcatcagcaccctgaat
cctcacgtgtattatggaggcatcagcaccatggacctggagcgcgaagaccacttcttc
aagggcttgggctacacaccaatcactaacatcaccaaccacatcatggaagaggtggcc
caggagatgcacatgcaggatcatctggagatgtttgccagtgaggaggacctggagaac
gccagcctttatgagccttccagctacgtcggtgtggtgttcctggacagctccgccacg
tcttacaggctacgctttccgtacaaccagctgccctttcccagcgattacacagaatct
attgcaaactgttttaccagctccgtgaactgcagagcggctaactactggtactctggc
ttcatccgcctgcagtctctgatcgatgcagccatcatccagatgcagacgaagcgttct
gttcggagtgagatggacctgagtgtagtgatgatgggtcagccgggctctgtggaggtg
cagaaattcccccacgccctcatctccatctacctggtcctggcctttacgccgttcgtc
accttcctcatcgtcaacgtggcagctgagaaggagcatcgcctcaaagacaccatgacc
atgatggggctctacgacaccgctttctggttgtcatggggtctcctgtacgctgccctg
gtaaccaccatgtccttcctaatgtccatcatcgctacgtacacggccctgttccctaac
agtgacttcttggttatattccttctcatcttcctctacggaatatcatcgatcttcttc
tccttcatgatgaccccgctatttaagaagcccaagtttgccagcacagtgggctccatg
ctgacggtggtgttcggctgcctgtccctgttcaccgtgctgctgaaggacttccctcag
cctctggtctggctcctctgcctgctctcccccagcgccttctccatcgggattgcacag
gtggtctacctggaggcccagggagatggtgctgtgttctcctccctggctaacggccct
catcctctgtacgtgcccctgttcatgctcgttgtggactgcatcctctacctgctgtta
gctgtctacctggaccaggttctgcctggggactttggaatgaagcggtccctggtgtac
ttcctgaagccttcctattggtcgaaacgcagaaagcgttacgttgaagtgagctcggta
tacgacgcagaggtgaaaggcacttcaggtggcgacgagcatgtggaacccatttcccct
gagttcagagggaaagaggctatccgcatcaataacatccataaagtgtacaaagagaag
gacagcgtggtggaggctctgagaggtttgacgtttgacatctatgagggccagatcacc
gctctgctgggacacagcggggctggaaagtccactctcatgaacatcctgtgtggcatc
tgcacgcccaccagcggctcggccaccatctatggctcccccgtagcagagatcgcagat
ggctccgaaatgaagcagctggtgggaatctgcccccagtttaacatcatctttgatgtg
ctcactgtggaggagcacctccgcatgtttgctgccatcaaagggatcctaccctcggac
atcgacgctgaggttaccaaagtgctgaaggatctagacttggaaaaaattgcgactgct
caggccaaaaatctgagtggaggccaaaagaggaaactctctgtgggcatcgccattctg
ggagatcctaagatcttgctcttggacgagcccacggccggcatggacccctgctccaga
caccaggtgtggacgctgctgaagaagcgcagggccggcagagtcactgtcctcagcaca
cactacatggacgaggctgacattctggctgatcgcaaagctgtgatttctcaaggacag
ctcaagtgtgttggctcttctctctatctcaaagtcaagtgtggtgttggatatcatctc
agaatgtccatcaacgagggatgcgaagctgaaaagatcacgtcattggtcaagcagcat
gtcaccaaggcgaagttatctcgacaacatgacgcagagttgaccttcactctgcctctg
gagggcatggacatgttttcaggcttgttttcggagatcgattgccaacccaatctggga
attatcaactatggggtttctatgacaaccctggaggatgtttttcttcgtttagaggca
gagaccgaaatagaccaagctgactacagtgtgtttaatcgggagcaggcggaggaggaa
ggtgacgacgcctctctggataatacggaccagcagctgctgaccttctctgacaacaag
tctgacgtcgtgtcgggtcacgctctgtggcggcagcagttcagcaccgtggcctggctg
cacatgctcaacatgcgtagggagaggaaagccttcatttacaccctgtccctgttcctg
gtgttcgtggctgcagtgctcgtcctttctctggccacaggaaacatccagattcactcc
tcagagcgccagtttctacccatttacctcctcaacaaaaacgcgatgccgcacagatac
tctaccggcctcctggttcagaactcctcaggctctgatatttctgacttcatccacaac
ctggagtctcaggacctcaaagtagatctgatgaaacacggtgactacatggctgcagcc
ccccacagcgccgccatcaacgtgaccggatccagcaaggggttcaggtacagtgttgcg
ttcaacagcaccaccgttcactccttgccaatggctgtgaatgtattaagcaacgctttt
ctcagaggtctgaatggcactggacggataagaacctggaccaaaccatttgattatcaa
atgcccgatgccacgtcctacgctctggtgtacatcgaggccatcattctggggatgctg
gctgctgggatgcctgcgtatttcgccatggaccacactcgagacagagagatcaagtgt
cgctccacactgcgtatctctggcctggtcccgtcagcatactggtgcggccaggcagcg
gtggacatccccttctactacctcatcctctccggcatgaccatggtcctcttctccttc
aacactggaaacctgctcacctccagcaacctcacctctgtggtgctgtgtaccgttggc
tttggtccagccatgatcctcttctcctatgtgtgttcttttggcttcgctcgagtccag
agcaacagagatttcttctctgtcatctccatgatggtgtgtgtggtgtcggcttcgctg
gttcagttgtcatttgtaaacgacagccctgaactgaccagaaacctgcacaacgccctg
tgtttcttcaaccctctgtaccctctcatgggctgcctcaactgcatcaccaagtcgaca
ttcctcccctcgctgtatgagtccaacttcttgtggaagaacctgctcattgcagttgta
gctccctatctgcagtgcgtcctgctgctcttcctgctgcgctggctggagatccgttac
ggagggaggaccatcggcagtatctcgtccaagtcgaagcccagactggacaaacacata
gaggaagggctgaacgaggatgaggatgttcggatggagaaggccagagtgaaggaggcg
ctcacctgccagtcatgtgaagagaaaccagcggtggttgtgagtaacctgagcaagcag
tacaaaggcaagagagaaggcttttctctgaacaaggggaggaaagaggcgacgaagaac
atctctttctgcgttcgcaaaggggaagttcttggactgttgggccccaacggatcaggg
aaaagcaccatcatgcacatgctgtcgggggacacggaccccacctcaggccaggtgctg
atgggggactacagcacagagttccgtccggtggagaatcctctggagcatgtgggctac
tgtcctcaggtgaaccctctgtggcccaggatcacactgcaggagcatctggagatctac
gccgccatcaagggtctgaaaggacacaatgttcctgacatcatcaaacgtgtggcgaat
gctctggagctgaaggaccatttaaataaacaaaccaagaccctgtcggcaggactcaag
aggaagctgtgctttgctctgagtatgatcgggaatcctcagatcgtcttgctggatgag
ccgtcctcggggatggaccccaagtccaaacagcgcatgtggagggccattcgtgctgcc
ttcaagaaccgtcagcggggagccatcctcaccacgcactacatggaggaggcggaggcc
gtgtgtgaccgcgtcgccatcatggtgtccggacagctcagatgcatcggctcgatccaa
catctaaaagggaaatacggtcgcggctacagtctggaggtgaagctcagagaggagctg
acggggctgcagccggtggcgctgctgcacaaagagattctccggatattcccccacgct
gcccggcaggagagcttcgctactctgatggtttacaagattcccacggaggatgtcaaa
tctctggcaatggcattctctcagttagagagtgccaagcaaaacttcaactttgaagac
tacaacttctcccagtccaccttggagcaggtgttcatggagtttgccaaggagcaggag
agcgaggaggaggaggtgggctccctcagcaccacgttccagtggcagcggctccgtcag
gacggctctgtgcccgccacccaccccgacagcatcgtgcaccagctgtga
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