Pseudochaenichthys georgianus (South Georgia icefish): 117465110
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Entry
117465110 CDS
T09629
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117465110 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgeo03400
]
117465110 (msh2)
DNA repair and recombination proteins [BR:
pgeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117465110 (msh2)
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
117465110
NCBI-ProteinID:
XP_033963893
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Position
19:14751146..14763404
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AA seq
929 aa
AA seq
DB search
MAVQPKHNLSMDSAAESGFLSFICSMPEKPDTTFRIFDRNDFYTVHGKDAVFAAKEVFKT
NGVIKYLGSGSRKLESVCLSKMNFEAFVRDLLLVRQYRVEVYKNHSKSSKDWKLEYKASP
GNLTQFEEILFGGGTGAVESAGVVAVRVATGADGQRVVGVGYVDAAQRMMGVCEFPDNEI
FSNLESLLVQVGPKECLLAQGDGNTDGSKLREVVERGGVLVSERKRAEFSSKDTVQDLNR
LLRAKKGESVASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTSLDLGQYMRLD
NAAVRALNLFQGAPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLDMV
ESFVCDSELRQTCQEDLLRRFPDLHRLSKKFQRHSATLQDCYRVYQAVSHLPTLVSALER
YSGSYEVLLEAVFLSPLRDLNSDFVKYQEMIETTLDMNQIDHHEFLVKASFDPVLSELRE
KMDELEESMKAVLNSAARELGLDAGKTVKLESNAMLGFYLRVTCKEEKTLRNNKKFSTLD
VQKNGVRFTNGKLSSLNEEYTKNREEYEGAQDAIVKEIINIASGYVDPLQTMSDVIAQLD
AVVSFAVASVSAPVPFVRPRLLADGCRRMELTQARHPCMETDADTAFIPNDITFTQGEKN
FYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQVKGVS
TFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKISCFCLFATH
FHELTALAAQQPTVHNLHVTALTSHNTLTMLYRIKHGVCDQSFGIHVAELACFPPSVVAM
AKEKAEELEEFQEPAGGKGPEAKRRRTDKQDGETLIQEFLEKAKSLPAATMSEEEVKTAL
RKMKQELLSKNNTYISEILSRCVPAKSLI
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaaacacaacctgtctatggacagtgcagccgaaagtggctttcta
agctttatttgttccatgccggagaaaccggacacaactttcagaatatttgaccgtaat
gacttctacactgtccacggaaaagatgcagtattcgcggccaaggaagttttcaagacg
aatggggtcatcaaatatttgggctcagggagtcgcaagttggaaagtgtctgcctgagc
aagatgaacttcgaggcctttgtgagagacttgctgctagtgaggcagtacagagtggaa
gtttacaaaaaccacagcaagagcagcaaagactggaagcttgagtacaaggcctctcca
ggaaacttgactcagtttgaagagattctgttcggcgggggaaccggagcagtggagagt
gcaggagttgtagccgtgcgtgttgctacaggagctgacggacagcgcgtggtcggggtt
ggctatgtggacgctgcccaaaggatgatgggagtgtgcgagtttcctgacaacgagatt
ttctccaacctggagtctcttctcgtccaggtcggccccaaagagtgtctcttggcccag
ggcgatggcaacactgacggcagtaaactacgggaggtggtggagcgaggcggcgtgctg
gtctctgagaggaagagagcagagttcagcagcaaagacacggtccaggatctgaaccgg
ctgctgagggccaagaagggagagagtgtggcgagcaacacgctgcctgagctggacaaa
caggtggccatgtcgtgcttggctgcagtggtgcgtttccttgagctgctctctgacgag
tccaactttaactccttcagtctgacctctctggacctgggtcagtacatgaggctggac
aacgctgccgtcagggctctcaacctcttccagggagcccccgatgacacaagtggagct
cattcattggccggtctgttgaacaagtgccgcacgccgcagggtcagcggctggtcaac
cagtggatcaaacagccgctcatggacaaaaccaaaatagaggagaggctggacatggtg
gagagctttgtgtgtgactctgagctcaggcagacctgtcaggaggatctgttgcggcgt
tttccggaccttcaccgtctgtccaagaagttccagcgtcactctgcgactcttcaggac
tgctaccgcgtctaccaggccgtgagccacctcccgacactcgtcagcgccctggagaga
tactcaggtagctacgaggttctgttggaggcggtgttcctctctcctctcagagacctg
aactctgactttgttaaataccaggagatgattgaaaccacactggacatgaaccagatt
gaccaccacgagttcctggtgaaggcgtcattcgaccccgtgttgagcgagctgagagaa
aagatggacgagctggaggagagcatgaaggcggtgctgaacagtgcagccagagaacta
ggtctggacgctggtaagacggtgaagctggagtctaacgccatgctgggcttctacctg
agagtcacctgcaaggaggagaagactctgaggaacaacaagaagttcagcacgctggac
gtccagaagaacggagtgcgcttcacaaacgggaagctgagctctctgaacgaggagtac
actaagaaccgcgaggagtacgagggggcccaggacgccattgtcaaagagattatcaac
atcgcctcaggctacgtggatcctctccagacgatgagcgacgtgatagcgcagctggat
gccgtggtgagtttcgccgtggcgtccgtctccgctcctgtgccgttcgtgcggcctcgc
ctgctggcggacggctgcaggcggatggagctgacgcaggccaggcatccctgcatggag
actgacgctgacaccgccttcatccccaacgacatcaccttcacccagggagagaagaac
ttctacatcattacaggaccaaatatgggcggtaaatcgacgttcatccgtcaggtggga
gtgatcgctctgatggcgcagatcggctgctttgtgccgtgtgaaaaggcggagctgagt
gtgattgacagcgtcctggccagggtgggagcgggagacagccaggtcaaaggagtgtcc
acttttatgtctgagatgctggagacggctgccatcctgcgctcggcaacagagaactct
ctcatcataatcgacgagctcggaagaggcacgtccacgtacgacggctttggtctggcc
tgggccataagcgaacacatcgcctccaaaatcagctgcttctgtctgttcgccactcac
ttccacgagctgacggccctggcagcgcagcagcccaccgtccacaacctgcacgtcacc
gctctgacctcacacaacactctcaccatgctgtacaggatcaaacacggtgtgtgtgac
cagagtttcggtatccatgtggccgagttggcttgcttcccgccatcggtggtggccatg
gcgaaggaaaaggcggaggagctggaggagttccaggaaccagcgggggggaaggggccc
gaggccaagagacgacgcacggacaaacaagacggggaaaccctgatccaggagttcctg
gagaaggccaagtccctccctgctgccaccatgagtgaagaagaggtgaagacagcgctg
aggaagatgaagcaggagctactctccaaaaacaacacatacatctcagagatcctttca
cgctgtgttcctgcaaaaagtttgatttaa
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