Pseudochaenichthys georgianus (South Georgia icefish): 117465462
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Entry
117465462 CDS
T09629
Name
(RefSeq) cadherin-12-like
KO
K06804
cadherin 12, type 2, N-cadherin 2
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pgeo04515
]
117465462
Cell adhesion molecules [BR:
pgeo04515
]
Cadherins
Major cadherins
117465462
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_FAT4_N
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_4
Stevor
RET_CLD1
DUF443
ASFV_J13L
Fibulin_C
7TM_GPCR_Srw
Motif
Other DBs
NCBI-GeneID:
117465462
NCBI-ProteinID:
XP_033964155
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All DBs
Position
20:complement(19341128..19455594)
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AA seq
803 aa
AA seq
DB search
MLTRNCLLLFLWILVDEGSVSSLRPPSPPLGRSRTGREHAKSLVGPMRNGAAGYQRVKRG
WVWNQFFVLEEYMGSDPQYVGKLHTDLDSGDSGVKYTLSGDGAGSIFTIDQTTGDIHALR
SLDREEKPYYTLRAQAVDIDTNRPLEPESEFVIKVQDINDNEPKFLEGPYTASVPEMSPV
GTYVTQVTATDADDPTYGNSARVVYSILHGQPYFSVDPKTGVIKTALPNMDREVKEQYQV
LIQAKDMGGQLGGLAGTTTINITLSDVNDNPPRFSKSFFHLRVPESSALGSAVGRIKAHD
LDIGKNAEVEYTIVPGDGGAMFDITTNEHNQEGIIILKRPLDYESKKAYTFKVDASNAHL
DPRFQSFGAFKDTATVKINVLDVDEPPVFNKPSYMMDVYEDTPAGTIIGAVTAQDLDASS
SPVRYSIDWKSDLDSYFDIDPVEGTISTNELLDRESIAQHNISIVATKLNSPVLSSRVAV
TVHVLDINEFPPELASPYETFVCENSKAGQVIQTFSAQDQDLRAAGQQFSFKSPKEDMKN
KNFTIRDFGNNTAGIVTKRGGFRRRLQEIYLLPVVIDDNGYPPKSSTGTLTIRVCGCESD
GSLLTCSAEAIFLPVGLSTGALIAILLCIIILLVIVVLYVGLRRQKKKETLMSSKEDIRD
NVIHYDDEGGGEEDTHAFDMGTLRNPKVVKENLFRRDVKPEMKKGPRAPVSQDSADIRHF
INQRLKEHDVDNSAPPYDSLATYAYEGDGSVAESLSSIESIVIDPEEDYDYLNDWGPRFK
TLAGIFGEHSETQSNSTTTENTH
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgctaacaaggaactgcctgctgctgttcctttggattcttgtcgacgaaggctcagtc
tcttctttgcgtcccccttcgccgccactgggacggagcaggacggggagggagcacgcc
aagagcttggtgggcccaatgaggaatggagcggctggatatcaacgggtcaaaaggggc
tgggtgtggaaccagttctttgtactggaggagtacatggggtcagacccgcagtacgtg
ggcaagctgcacactgacctcgatagtggggacagtggtgtgaagtacactctctccgga
gatggggctggctctattttcacaattgaccaaacaacaggggatatccatgccttaagg
agccttgacagggaggagaagccttactacaccctacgcgcccaggctgttgacatcgac
accaataggcccctcgagcccgagtcagaatttgtaattaaggttcaagatatcaacgac
aatgagccaaaattcctggagggtccatatacagccagtgtccctgagatgtcaccagta
gggacatatgtgacgcaggttacagccaccgatgcagacgaccccacctatggaaacagt
gccagagtggtgtacagcatcctccatggacagccatacttctccgttgaccccaaaaca
ggtgttataaagacagccttgcccaatatggacagagaggtgaaggaacagtaccaggtg
ttgatccaggccaaggacatggggggccagctgggggggctggccgggaccaccactatc
aacatcaccctcagcgacgtcaacgataatccacccaggttctctaaaagtttctttcat
ctccgggttccggagtcttccgcattgggctctgctgtcggaagaatcaaagcccatgac
ttggacatcgggaaaaatgccgaagtagagtacaccatcgtgccaggtgacggaggggcc
atgttcgacatcaccacgaatgaacacaaccaagaggggatcatcattctcaaaaggccc
ctggactatgaaagcaagaaggcatacacctttaaggtagacgcctccaatgcccatctg
gatccacgatttcaaagctttggggccttcaaagacacagcaacagtgaagattaacgtg
ttggatgtggatgagcccccggtgttcaataagccctcctatatgatggatgtgtatgaa
gacacacccgcgggcaccatcatcggagcagtgacggcacaagatttagacgccagcagc
agtccggtcaggtattccattgactggaagagtgacttggacagctactttgacattgat
ccagtggagggaacaatttccacgaatgaactccttgacagagagagcatcgcccagcat
aatatctctatcgtggccaccaaacttaatagtccggttctgagcagtcgagtggccgtc
actgtccacgtgttggacatcaatgagttcccacctgaactggccagcccttacgagacg
tttgtctgtgaaaactccaaagctggacaggtgattcagacgttcagtgcacaagaccag
gatctacgagcggctggacaacagttctccttcaaatcgccaaaagaagacatgaagaac
aagaactttaccatccgggactttggaaacaacacagctggaattgtgactaagcggggt
ggcttcaggcggcgtttgcaggagatctacctccttcctgtggtgattgatgataatggc
taccctcctaagagcagcaccggcactctgaccatccgtgtgtgtggctgcgagtccgat
ggctcactgctaacgtgcagcgccgaggccatctttctccccgtgggcctcagcacagga
gcgctgatcgctatcctcctatgtatcatcatcctgttagtaatcgtggtcctctacgtt
ggcttgagacggcagaagaagaaagaaaccctcatgtcatccaaagaggacatccgggat
aatgtgatccactatgacgatgaaggaggtggagaagaggacacgcacgcctttgacatg
gggacgcttcgcaatcccaaggttgtcaaagagaacctattccgcagggacgtcaaacct
gagatgaagaaaggtccgagggcacctgtctctcaggacagcgctgacatccggcatttc
attaaccagcgtctgaaggagcacgatgtggacaactcggcgccgccctacgactccctg
gccacgtacgcttacgagggcgatggctccgtggctgagtcgctcagctccatcgagtcc
atcgtcatagaccctgaggaggactatgattacctcaatgactgggggccccgctttaag
acactagcagggatattcggggagcactcagagactcagtcgaactcaaccaccacggag
aacacacattga
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