Pseudochaenichthys georgianus (South Georgia icefish): 117465523
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Entry
117465523 CDS
T09629
Symbol
ptchd1
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
117465523 (ptchd1)
Domain-containing proteins not elsewhere classified [BR:
pgeo04990
]
Other domain-containing proteins
Patched domain-containing proteins
117465523 (ptchd1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
117465523
NCBI-ProteinID:
XP_033964251
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All DBs
Position
20:complement(12898902..12918017)
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AA seq
980 aa
AA seq
DB search
MLGSAPGLSGRWERLEPRPRARMLRQVLHAGLRTSFHALGRFVASHPVFFASAPVLLSIL
LGASFSRYRVEEDVESLLAPKHSLAKIEGNLVDSLFPVNRSKHALYSDLQTPVRYGRVIV
TTRKGSVLDPVHLDTILKLHKRIYQMPVTVPATGVNSFNYSFSYLCLPDDKNVCIIDDII
RAMEEIQSARISNSSIPILRYPITQLADGRQAYIGHQLGGVQGWGPNGGVRGQGTGAKGE
GVRSARALQLTYYLQARGGLMDRVASQWENAFCAELQHFAALHPKLGLHPSTSSSLRTDF
QFSSVLAHRPLLASLGACGVLAMLCCTMRDCVRSKPWLGLLALLSITLSGLTAAGILNLT
GTTYNSTYLGIPFVMLGHGLFGSFEMLSSWRRTREDQHVKERVASVFEDVMLRFSGSTML
HLMTLGLAASPLTNMEAVRLFCRTAMLAVTISYIYMLSFYSSCLVFTGYLETGYRHGCFC
RRVPKPERLDSKPAWYRCLMYTRYQDEAQTTNPPIGVGNSHSHTPNSNLTHTHTHPHTAN
NPATHGLGHVANSTLTHPHTHSTAHMDPNPQDSHLLLGCVRRCYGDWITNTYVKPFVVLL
YLVYISFGLMGFLQVTQGSDPSALVAMDTATVLYTRAQQRYFSSYSPVIGFYIYESAPYW
NASVQRDLLEYAKGFQRISWLEAYLNYLTDNNQSTSQPRENFTHTLRHSFLREPQFAHFA
DDIIFAERGQGEEPDVAASRIFLVAKTTENKREEMSVLLDTLRRLSLTSRVRFLIFNPSF
VYLDRYAAAVSSPLRHSLLAVLFLLGLSSLAVVEPLVSVWLGLTVLSVQFGVLGFMTLWG
VELDCMSVLCLISALGHSADCSGPLLCGFASGRGDSRTRWVRVALERHGVPSLQTLICYS
AALVPVGAVRSNLTHTLFRCLTLTAGCSALHTLAFLPTLLTFLPPSKTPGNRPEEDGQRQ
EVECVEMNDSTRVVDQITTV
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgctcggcagtgctccggggctttccggtcggtgggagaggctggagccgcggccgcgc
gctaggatgctgcgccaggtgttgcacgcgggcctgaggacctccttccacgcgctcggc
cggttcgttgcgagccacccggtgttctttgcctcagcgcccgtgctgctctccatcctg
ctgggtgccagcttcagccgttaccgggtggaagaggatgtggagagtttgctcgctccc
aagcacagtctggctaaaatagaaggcaacctggtggacagcctcttccccgtgaaccgc
tccaagcacgcgctctactcagacctgcaaacacccgtacgctacgggcgcgtgatcgtc
accacccgaaaggggagcgtgctggacccggttcatctggacacaatattaaagctccac
aaacgaatctaccagatgccggtgacggtcccagccacaggtgtcaacagcttcaactac
tccttctcctacctctgtctcccagacgacaagaacgtgtgcatcattgatgacatcatc
cgtgccatggaagagatccaatcagctcgcatctctaacagctccatcccaatactgcgg
tacccgatcacgcagcttgcagacggaaggcaggcatacattggccaccagctgggtgga
gtgcagggctggggtcccaatgggggggtgcgtggtcagggaactggagccaagggagaa
ggtgtacgttctgcaagggcgttgcagctcacctattacctccaagcccgtggcggccta
atggaccgggtggccagtcaatgggaaaatgccttctgtgccgagttacagcattttgca
gcgttgcaccctaaactggggctgcacccttctacttcctcttctctgaggacagacttc
cagttctcctcggtgctggcacaccgccccctgttggctagcttgggggcgtgtggtgtg
cttgccatgctctgctgcactatgagggactgtgtgaggtccaaaccctggttgggactg
cttgctttgctgtcaattactctatcaggcctcactgctgctgggatactcaacctgacc
gggacgacctacaactctacgtacctaggcatccctttcgtcatgcttggtcatggcctc
ttcggctctttcgagatgctgtcgtcatggaggcgaactcgggaggaccagcatgtgaag
gagcgggtggcgagtgtgtttgaggacgtcatgctacgtttctccggctccaccatgctc
cacctgatgaccctgggtctggctgcctcgccactgaccaacatggaggccgtccggcta
ttttgccgcaccgccatgttggctgtcaccatcagctacatttacatgctgtccttctac
agttcctgtctggtgttcactgggtacttagagaccgggtacagacatggctgcttctgc
cggcgagtccccaaaccggagcgcctggactctaagccggcctggtacaggtgtcttatg
tacactcgctatcaggatgaggcccagaccaccaacccaccaatcggggtcggcaacagt
cactctcacacaccaaactctaacctaactcacacacacacacacccacatacagcaaac
aaccctgccacgcatgggctcggtcatgtggctaactccacactcacacatccacacaca
cattccacagctcacatggatcctaatcctcaggactctcaccttttgctgggatgtgtg
aggcgttgctatggagactggatcactaacacctatgtcaaaccctttgtggttctgctg
tatctggtgtacatctcctttggattgatgggcttcctgcaggtgacccagggttcagac
cccagtgcactggttgccatggatacagcaacagtattgtacacccgtgcccagcagcgt
tacttcagctcatactcccctgtcattggattttacatctatgaaagcgcaccctactgg
aatgcctcagttcaacgggacctgctggaatatgccaaaggcttccagcgaatcagctgg
ctagaagcatacctgaactacctgacagataacaaccagtccaccagccagccgcgggaa
aacttcacccacacgctccgtcactcttttctccgtgagcctcagtttgcccactttgct
gatgacatcatatttgcggagcgtggtcaaggcgaggagccagatgtggcggcgtcccga
atcttcctggtggccaagacaacggagaacaagcgggaggagatgtcagtgctgctggac
acgctgcggcgcttgtcgctgacctcgcgcgtccgcttcctaatctttaacccctctttc
gtctacctggaccgctacgctgcagcggtcagctcccccctcagacactcactgctggcg
gtgctcttcctgttgggtctctcctctctggctgtagtggaacctctggtctctgtgtgg
ctgggcctcaccgtgctctcggttcagttcggggtgctgggcttcatgaccttatggggt
gtggagctggactgcatgtctgtgttgtgtctgatctcagccttgggacattctgcggac
tgcagcggtcccctcctctgcggtttcgcctcaggtcgaggggacagcaggactcgctgg
gtgagggtggccctggagagacacggggtgccctctctacagacgcttatctgctacagc
gccgccctggtgcctgttggggcagtacgctccaacctcacacacacactcttccgctgc
ctcaccctaacggccggctgctcagcccttcacacgcttgcattcctgccgaccctcctc
actttcctgcctccctccaagaccccgggaaaccgacctgaagaagacggccagagacag
gaggtggagtgcgtggaaatgaacgacagcactcgtgtggttgaccagatcaccactgta
tga
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