Pseudochaenichthys georgianus (South Georgia icefish): 117465744
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Entry
117465744 CDS
T09629
Symbol
sox17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
117465744 (sox17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117465744 (sox17)
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117465744 (sox17)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
117465744
NCBI-ProteinID:
XP_033964632
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All DBs
Position
20:complement(16863196..16865219)
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AA seq
391 aa
AA seq
DB search
MSSPDAGYASDDQTQARCTMSVMMPGMGHCQWADPHSPLGDTKVKSEPCASSSGSQNRGG
KTEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVTEKQPFVEEAE
RLRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLVHGVSDHQGPSMSGDGRLCVESLGLG
YHEHGFQLPPQQLSHYRDAQGLGGPSYESYSLPTPDTSPLDAVESDLMFFPSHSQEDCHM
MPAYAYHSQAAEYQSQDPHSNHHGNPRHPSSAPEQPPSYMGCPNPLAMYYTQHYSPSQAK
RHPGGAGQLSPPPDSHPHSADSVEQMQHSELLAEVDRSEFEQYLSSSSARGDMPGLPYGT
HEAGMQGPESLISSVLSDASTAVYYCSYNNS
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtcccgatgcgggttacgccagcgacgatcagacccaggcaaggtgtacaatg
tcagtcatgatgcctggaatgggacactgccagtgggccgacccccacagtcctctcggg
gacaccaaagtgaaaagtgagccgtgcgcatccagctccgggagccagaaccgcggcggc
aagactgaaccgcggatccgacggcccatgaacgcgtttatggtgtgggcgaaggatgag
cgcaagagactggcgcagcaaaacccggacctgcacaacgcggagctgagcaaaatgctg
gggaaatcatggaaagcccttcctgtgacggagaagcagccctttgtggaggaggctgag
cggctgagggtccagcacatgcaggaccaccccaactacaagtaccggccccggcggcgg
aagcaggtgaagaggattaagaggctggactctggctttcttgtccacggcgtgtccgat
catcagggcccgtccatgtccggggacggcaggctgtgtgtggagagtctgggcctgggc
taccacgagcacggcttccagcttcccccgcagcagctcagtcactaccgagatgctcag
ggtcttgggggcccctcttatgagagctacagcctccctacgcctgacacctctcctctg
gacgctgtggagtcagacctcatgttcttcccttcacattcacaagaggactgccacatg
atgcctgcgtacgcttaccactcccaggcggcagagtaccagtcccaggaccctcactct
aaccaccatggcaaccctagacacccctcctcagctccagagcagcccccttcctacatg
ggatgccctaaccctttggccatgtactacacccagcactacagtcccagccaggccaag
cggcaccccggtggggcagggcaactctccccccctcctgactcccaccctcactcagca
gacagcgtggagcagatgcagcactccgagctgctggccgaggtggaccgcagcgagttc
gagcagtatttgagctcctcttcggcacgcggggacatgccaggcttgccgtacgggaca
cacgaggccggcatgcagggacctgaaagcctcatatcatcggtgctgtcagacgccagc
acagctgtgtattactgtagctacaacaactcttaa
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