Pseudochaenichthys georgianus (South Georgia icefish): 117465832
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Entry
117465832 CDS
T09629
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117465832
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pgeo01009
]
117465832
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pgeo04515
]
117465832
Protein phosphatases and associated proteins [BR:
pgeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117465832
Cell adhesion molecules [BR:
pgeo04515
]
Cadherins
Protocadherins
117465832
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
Neur_chan_memb
MAP17
Motif
Other DBs
NCBI-GeneID:
117465832
NCBI-ProteinID:
XP_033964768
LinkDB
All DBs
Position
3:28115444..28389708
Genome browser
AA seq
1236 aa
AA seq
DB search
MDLKDYYLLGALFACLWLDPSIAQELIYPIREELQENVLIGNIPKDLNISHTNAATGASA
NLVYRLVSKAGDNPLVRVLSSTGEIFTTSNRIDREKLCPGPSFEDSECSFEIEVVILPND
YFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFAIPSATDPDTGPNSVHKYEL
INGQSAFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGSPQKSSTAILQVT
VTDVNDNRPVFKEGQIDVHIPENSAIGTSVVQLQASDADIGANAEIRYVFGTQVSAATKR
LFALNTTSGLITVQRLLDREETAIHKLSVLASDGSSSPARATVTINVTDVNDNPPNIDLR
YIISPINGTVFLSEKDPINTKIALITVSDKDTDINGKVICFIEKDVPFHLKAVYDNQYLL
ETSALLDYEGTKEYNFKIVASDSGKPSLNQTALVRVRLEDENDNPPIFTQPVIELAVMEN
NKRDLFLTTLSATDEDSGKNAEIVYQLGPNASFFDLDRKTGVLTASRVFDREDQDRFLFT
ITARDNGTPPLQTQAAVIVTVLDENDNNPKFTHNHFQFFVSENLPKYSTVGVITVTDSDA
GENAAVSLSILNDNENFILDPYSGVIKSNVSFDREQQSSYTFDVRAVDSGRPPCSSAAKV
TINVIDVNDNTPIVIYPPSNTSFKLVPLSSIPGSVVAEVFAVDGDTGMNAELKYTIVSGN
NKGLFRIDPVTGNITLEEKPALTDIGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTVGNS
TLIYDLIRRTMETPIDRNIGESSETYQSGDYLTIMIAFVTGALVVIIVIFVTVLLRCRHA
SRFKAAQRKKQGAEWMSPNTENKQNKKKKRKKRKSPKSSLLNFVTIEGNKPDDPAHEPIN
GTISLPTELEEQGIGRFEWNATPTTTFKPSSPDLARHYKSASPQSAFHLKADTPVSVKKH
HVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKAPMHTRQQGTLTRART
ELNPEYLDLRPRAELNPEYWTPCTPLSQRRVTFHLPDGSQESCSDSGLGDHEPVGSGSLL
TQPLPLVQAQDDFYEQASPDKRTEADGNSDPNSDGPLGPRGLVEATEMCTQECLVLGHSD
NCWMPPTLGTYQQPKSPVSSFGSQREWGPKEKLLNGHTLTRTWKNDSGRSDPFGDRKPFG
SGEGHFTSGGMADIPLVSLKSCQPASCPDSPKDQQL
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggatctaaaagactattacctgttgggtgccctgttcgcctgcttatggctagatcct
tcaatagcccaagagctaatataccccatcagagaggagttgcaagaaaatgtcctcatt
ggaaacataccaaaggacctaaacatttcccatacaaatgctgccactggagcaagtgct
aatcttgtgtaccggctcgtctccaaagcaggagataaccctctggtgcgtgttctgagc
agcactggcgagatattcacaacatcaaaccgaatcgacagggagaagttgtgccctggt
ccctcgtttgaggacagcgagtgctcctttgaaattgaagtggtcatcctccctaatgat
tatttcaggctgattaagatcaaaataattgtcaaagacacaaatgataatgcccccatg
ttcccgtcccctgtgatcaacatctccatccccgagaacacgctcattaacagccgattt
gccattccttctgccactgacccagacactggccctaacagtgtccacaaatacgagctc
atcaacgggcaaagtgcctttggcttagacatagtggaaacgcctgagggggagaagtgg
ccccagctcattgtgcagcagaatctggacagagagcagaaggatacatatgtgatgaag
atcaaagtggaggatggtggcagtccacagaaatccagcactgcaattctccaagttaca
gtaacggatgtcaatgataacagaccggtgtttaaagagggtcagatagatgtgcacata
ccagaaaactccgctattggcacatctgttgtgcagctccaggcatcagatgcagacata
ggggcgaatgcagaaatacgttatgtatttgggactcaggtgtcagctgctacgaaaaga
ctctttgcattaaatacaacatctggcctaattacagtgcagagacttctcgacagagag
gagacggctattcataagctctctgttttagccagtgatggcagctctagtcccgcaaga
gctactgttactataaatgtgactgatgtgaatgacaatccacctaatatagacctgaga
tacataatcagtcccattaacggcactgttttcctctctgagaaggatcccatcaatacc
aagatagctctcatcacagtgtcagacaaagacactgacatcaatggcaaggtcatttgt
ttcattgagaaagatgtgcccttccatctaaaggctgtgtacgacaaccagtatctgtta
gagacatctgctctgcttgactacgaaggcactaaggagtataactttaaaatcgtggct
tctgactctggaaaacccagcttgaatcagactgccttggtaagagtgaggctggaggat
gagaatgacaacccgcctatttttactcagccagttattgagctagctgttatggaaaac
aacaagcgcgacctgttcctcacgactctcagtgccacagatgaggacagtgggaaaaac
gcagagatagtttatcagctgggaccaaatgcatccttctttgatcttgaccgaaaaact
ggggtcctgactgcatccagggtctttgaccgggaggatcaggataggttcctcttcact
ataacggcaagagataacgggacaccccctttgcagacgcaggcggctgttattgtaact
gtgctggatgaaaatgataacaacccaaagttcacacataaccactttcagttctttgtg
tctgagaatcttccaaaatacagcacagttggggtgataactgtcacagattcagatgcc
ggagaaaatgctgcggtttctctttctatactgaatgacaatgagaactttatcctggat
ccttactctggagtgattaaatctaatgtgtcattcgatagggagcaacagagctcctac
acttttgatgtcagggctgtggacagtggcaggcctccttgctcctcagccgccaaggtg
accataaatgtaatcgatgtgaacgacaacacccccattgtcatctatcccccctccaac
acatctttcaagctcgtacctctctcctctatcccaggatctgtggtagcagaagtgttt
gctgtagacggtgatacaggaatgaatgcagaactgaaatacaccattgtgagtggaaac
aacaaaggacttttcagaattgaccctgtcacaggcaatattactctagaggaaaaacca
gctttgactgacataggcttacacagattagtggtcaatatcagtgacctgggatatcct
aaatctctccatacacttgtgctggtatttctgtatgtcaatgacactgtgggcaactcg
actctcatctatgatctcatccgacgcaccatggagactccaattgaccgtaacattggt
gaaagcagtgaaacgtatcaaagcggtgactatttaaccataatgatagcctttgtaact
ggggcattggtagtgattattgtcatctttgtcactgtgcttctgcgctgccgccatgct
tccaggttcaaagcagcacagcggaaaaaacagggggctgagtggatgtcacccaacact
gagaacaagcagaacaaaaagaaaaagcgcaagaaaaggaagtccccaaaaagctctctg
ctcaactttgtcaccattgaggggaacaagcctgacgatcctgctcacgagccaatcaac
ggaaccatcagcctgcccaccgagctggaagagcaagggattggacgctttgaatggaat
gccacacccacaacaaccttcaaacccagcagcccagacctggcccggcactacaagtct
gcctcgccgcaatcggccttccacctcaaggccgacacgccagtctcagtgaagaagcat
cacgtgattcaggagctcccattggataacacatttgttgggggctgtgacaccctttcc
aagaggtcctccacaagctctgaccacttcagtgcctcggagtgcagctcccaaggaggg
ttcaagacgaaggcgcccatgcacaccagacagcagggaacattaactcgtgcccgaact
gaactgaaccctgagtatctggacctccgtccgcgagccgagctgaaccctgaatattgg
actccttgcacccctttatcgcagcggcgcgtcacgtttcacctgccggatggctctcag
gagagctgcagtgacagcggtctgggggaccacgagcctgttggcagtggctccctcctc
acacaacctctccctctggtgcaggcgcaggacgacttctacgagcaggcctcccccgat
aagaggactgaagctgacggcaactccgatcccaactctgatggccccctgggacctcgt
ggtctagtggaagctacagagatgtgcacacaagaatgcctcgtcctgggacattcagac
aactgctggatgcctccgacgttgggaacataccagcagccaaaatcacccgtgtctagc
tttgggtctcagagggagtggggtcccaaggaaaaacttctcaatggacatactctgacc
agaacctggaaaaatgatagtgggcggtcagatccttttggtgataggaagccatttggg
agtggagagggacacttcaccagcggtggcatggctgatattccactggtgagtctgaag
tcctgccagccagcgtcctgccccgacagccccaaggaccagcagctataa
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