Pseudochaenichthys georgianus (South Georgia icefish): 117466107
Help
Entry
117466107 CDS
T09629
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03018
RNA degradation
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117466107 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
117466107 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117466107 (lsm5)
03041 Spliceosome [BR:
pgeo03041
]
117466107 (lsm5)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117466107 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
117466107 (lsm5)
Spliceosome [BR:
pgeo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117466107 (lsm5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
117466107
NCBI-ProteinID:
XP_033965152
LinkDB
All DBs
Position
20:20680756..20682396
Genome browser
AA seq
93 aa
AA seq
DB search
MNMAATPATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFE
ITPEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggcggctactccagcaacaaatccgtcccagttgctcccacttgagcttgtg
gacaaatgtattggttcccgaattcacatagtcatgaaaaccgacaaagaaatcgtcggc
accctgcttggtttcgatgactttgtcaacatggtcctggaagacgtgacagaatttgaa
atcacaccggagggaagaaggataaccaaactggaccagatcctcctcaatggcaacaac
atcacaatgctcatacctggaggagaaggtcctgaagtatga
DBGET
integrated database retrieval system
