Pseudochaenichthys georgianus (South Georgia icefish): 117466188
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Entry
117466188 CDS
T09629
Symbol
itgb5
Name
(RefSeq) LOW QUALITY PROTEIN: integrin beta-5
KO
K06588
integrin beta 5
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04145
Phagosome
pgeo04148
Efferocytosis
pgeo04510
Focal adhesion
pgeo04512
ECM-receptor interaction
pgeo04810
Regulation of actin cytoskeleton
pgeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117466188 (itgb5)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
117466188 (itgb5)
04148 Efferocytosis
117466188 (itgb5)
09144 Cellular community - eukaryotes
04510 Focal adhesion
117466188 (itgb5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117466188 (itgb5)
04810 Regulation of actin cytoskeleton
117466188 (itgb5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117466188 (itgb5)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pgeo04515
]
117466188 (itgb5)
Membrane trafficking [BR:
pgeo04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
117466188 (itgb5)
Cell adhesion molecules [BR:
pgeo04515
]
Integrins
Integrin beta subunits
117466188 (itgb5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
EGF_integrin
PSI_integrin
Integrin_b_cyt
EGF_2
I-EGF_1
vWA_SIBA-E
EGF_Teneurin
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
117466188
NCBI-ProteinID:
XP_033965207
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All DBs
Position
21:complement(36916363..36987729)
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AA seq
803 aa
AA seq
DB search
MWSPGTWMWRVAVCCMLLETFLHTARGLNMCMGGSATSCEECLLIHRRCAWCAQEEFGRG
RTLTRCDFSQNLQKRGCDARFIEYPTSSVSVLHNMPLSSKGSGWTQNDVVQIQPQKVSLS
LRPGDQTWFELQVRQVEDYPVDLYYLMDLSLSMKDDLETIRNLGTKLALEMGKLTSNFRL
GFGSFVDKNMSPFSYTAPKYQENPCNGYKLFPNCVPTFGFRHILSLTDKVDRFNQEVQKQ
MVSRNRDAPEGGFDAILQAAVCKEEIGWRKEAYHLLVFATDDVPHLALDGRLGGLVQPHD
GECHLNDKNEYSASTQMDYPSLALLGEKLAENNIFLIFAVTKRLYVIYKNFTALIPGTTV
EILDTDSKNVIQLIIAAYNNIRSKVELSVWDHPEDIGLSFTATCQDGKPLPGLRKCADLK
IGDTVSFNVSVEARSCPPRGTEQSFTIKPVGFKDSLQVSVDYQGCDCGCSRTANTNSSIC
SNIGTYHCGTCHCEPGYLGAHCECQEGESGSSYLSACREAEGKQVCSGRGECSCNQCLCY
ESEFGKIYGSYCECDDFSCARHKGILCSGHGECHCGECKCHAGFIGDNCNCSTETSSCIA
DDGQMCSGRGSCVCGRCQCSEPGAFGDTCEKCPTCPDACGTKRECIECRLFNSGRLADNQ
TCQRLCKDEIITMETLDTEDPGAVLCLYKTENDCVMKFTYSEHASGLSILTALKEPECGR
GPDAMVVLLAVVGSILLVGGGAARVWKLAITVHDRREFSRFQSAGSRARFEMASNPLYKQ
PVTTHFVETDFNMYRKSYNGAVH
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcccggggacgtggatgtggagagtggctgtgtgctgcatgcttctggaaaca
tttctacacactgccagaggtcttaacatgtgtatgggtggcagcgctacttcctgtgaa
gaatgcctcctgattcaccgcagatgcgcctggtgcgcacaagaggagtttgggaggggg
cggactctgacacgctgtgatttcagtcagaacctgcagaagagaggctgcgacgctcgg
ttcatcgagtaccccaccagcagcgtctcggtgctgcacaacatgcctctgagctccaaa
gggtccgggtggacccagaacgacgtggttcagattcagcctcagaaagtctccctcagc
ctgcggccaggagaccagacgtggtttgagctgcaggtgcggcaggtggaggattacccc
gtggacctctactacctgatggacctctctctctccatgaaagacgacctggagaccatc
cggaacctgggcaccaagctggccctggagatgggaaagctcaccagcaacttcaggctg
ggcttcggctccttcgtggacaaaaacatgtctcccttctcctacactgctcccaagtac
caggagaatccgtgcaatggatacaaactgttccccaactgcgtccccaccttcggtttc
cgccacatcctctcgctgacggacaaagtggaccgcttcaaccaggaggtgcagaagcag
atggtgtctcgcaaccgcgacgctccggagggcgggttcgacgccatcctgcaggccgcc
gtttgtaaggaggagatcggctggaggaaggaggcgtaccacctgctggtgttcgccaca
gacgatgttcctcacctggctctggacggacggctggggggcctcgtgcagccccacgac
ggggagtgccacctcaacgacaagaacgagtacagcgcctccacacagatggactatccc
tctctggctctgctgggggagaaactggccgaaaataacatcttcctcatcttcgccgtg
acgaaacgcctctacgttatttacaagaacttcactgcgctcatacctggaaccacggtg
gaaatcctggacacggactccaagaacgtcattcagctgatcatcgcagcgtacaacaac
atccgctccaaagtggagctgtcggtgtgggaccacccggaggacatcggcctctccttc
accgccacctgccaggacgggaagccgctgccgggcctcaggaagtgtgccgacctgaag
ataggagacactgtatcgtttaacgtgagtgtggaggcgaggagctgccccccccgcggc
accgagcagagcttcaccatcaagccggtgggattcaaagacagcctgcaggtctctgtg
gattatcaggggtgtgactgtggctgcagccggacggccaacaccaacagcagcatatgc
agcaacataggtacctatcactgcgggacgtgtcactgtgagccggggtacctgggcgct
cactgcgagtgtcaggagggcgagtcgggcagctcgtacctgagcgcctgtcgcgaggcg
gagggcaagcaggtgtgcagcgggcggggcgagtgcagctgcaaccagtgcctctgctac
gagtccgagttcgggaagatctacgggagctactgcgagtgtgacgacttctcctgcgcc
cggcacaaaggcatcctctgctcaggtcacggggaatgtcactgcggggagtgtaaatgc
cacgcaggcttcatcggggacaactgtaactgctccacggagacgtccagctgcatcgcg
gacgacgggcagatgtgcagcggccgaggaagctgtgtgtgcggccgctgtcagtgcagc
gagccgggggcgttcggagacacctgtgagaagtgccccacctgccccgatgcgtgtggc
accaagagggagtgcatcgagtgccggctcttcaactctggacggctcgcggacaaccag
acctgccagcgcctctgcaaggatgaaatcatcaccatggaaacactcgacacggaggac
cccggcgcggtgctctgtctctataagacagaaaacgactgtgtcatgaagttcacgtat
tctgaacacgccagcggactctccatcctcaccgctctgaaagaaccagagtgtggtagg
ggtccggatgccatggtggtgctgctggcggtggtgggcagcatcctgctggtggggggt
ggtgctgctcgcgtgtggaagttggcgatcaccgttcatgaccggagggagttttcacgt
ttccagagcgcagggtcacgagcccgctttgagatggcctccaaccctctgtacaagcag
cctgtcacgacacattttgtagaaacagatttcaacatgtacaggaagtcctacaacggg
gcggtccactga
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