Pseudochaenichthys georgianus (South Georgia icefish): 117466195
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Entry
117466195 CDS
T09629
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117466195 (sox1a)
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117466195 (sox1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
117466195
NCBI-ProteinID:
XP_033965219
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All DBs
Position
21:complement(32692691..32775891)
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AA seq
288 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTNTGQTGPNSGSKANQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGPGGGVGMGVGMGVGMGSSGVGQRLESPGGHGGSAGSGYAHMNGWANGAYS
GQVAAAAAAAAMMQEAQLAYSQHPGSGVHHHHSHHHHSHNPQPMHRYDMTALQYSPISNS
QSYMNASPSGYGGISYSQHQGSGVSSSAAMGTLGSLVKSEPSISPLLE
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaactgacctccattcccccggtccccaaacgaacacaaac
acggggcaaacggggccgaacagtgggtccaaagcgaaccaggagagggtgaagagaccg
atgaacgcgttcatggtttggtcccggggccagcggaggaagatggcacaggagaaccca
aaaatgcacaactctgagatcagcaagcggctgggcgcagagtggaaagtgatgtccgag
gctgagaagagacctttcatcgacgaggcgaaacggttgcgagccatgcacatgaaggag
catccggattacaagtaccggccaagacggaagaccaagacgctgctgaaaaaggacaaa
tattccctcgctggtggacttctttctgggccaggcggtggagttggaatgggagttgga
atgggagtcgggatgggttcatccggggtcgggcagaggttagagagccccgggggtcac
ggaggttccgccggctccggctacgcgcacatgaacggctgggcgaacggtgcgtactcg
gggcaggtggcagcagccgcggcggccgcagcgatgatgcaggaggcgcagctcgcctac
agccagcaccctggcagcggggtgcaccaccaccactcacaccaccaccactcacacaac
ccgcagcccatgcaccgctacgacatgacggccctgcagtacagccccatctcgaactct
cagagctacatgaacgcttctccatccggctacggcgggatcagctactcacagcaccag
ggctccggcgtctcctcctcggctgccatggggacgttagggtcgcttgtgaagtcggag
ccgagtatttctccgttgttggaataa
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