KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117466275
Entry
117466275         CDS       T09629                                 
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain
  KO
K06237  collagen type IV alpha
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04382  Cornified envelope formation
pgeo04510  Focal adhesion
pgeo04512  ECM-receptor interaction
pgeo04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117466275 (col4a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117466275 (col4a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117466275 (col4a2)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    117466275 (col4a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pgeo04147]
    117466275 (col4a2)
   00536 Glycosaminoglycan binding proteins [BR:pgeo00536]
    117466275 (col4a2)
Exosome [BR:pgeo04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   117466275 (col4a2)
Glycosaminoglycan binding proteins [BR:pgeo00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117466275 (col4a2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 117466275
NCBI-ProteinID: XP_033965318
LinkDB
Position
21:complement(25486356..25541940)
AA seq 1676 aa
MSGTMQGQHERGLKNLRLLLLCLFIATLASGVHAGGKKHSGPCGGRDCSGGCKCFPEKGA
RGGPGPLGPQGSSGPPGRTGDAGIEGPKGQKGDPGRGGYMGPKGSVGMAGVPGFAGNDGI
PGHPGQAGPRGKPGADGCNGTHGDSGSSGQPGYNGSPGFPGQAGWKGQKGDTLELSVFMK
RFRGDPGMPGFKGIYGPPGNPGGEGNQGYPGPKGPQGPSGPRGPKGTMTQVLKGHRGSQG
DIGQPGLQGNSTHQQIQPPYGPTGLRGEKGLKGEIGDVADNKGETGVKGFPGPQGTSGAD
GRPGPRGDYGEAGPTGRDGFKGVRGEPGELISSESVWSWFSGGGPPGPPGNQGPEGERGP
VGDQGIPGPPGPPPSESQQQVSHFFGPFGIKGESGEKGPAGDPGLPADLAGPPGTNGRPG
SRGPLGPKGSWIEFFKGSAGGRGRPGNAGSKGLKGDHGLCECSIVNSPSGRPGPAGERGD
AGMTGEFGREGDVGNPGPHGDFGSPGFPGLNGEPGPQGRKGEARVVSGKAYPGDAGDPGQ
NGVQGTFGVSGRNGFPGISGIRGLPGEGKRGQYGDKGYSGQPGRPGSPGLSGQDGEVLGG
FKGQRGLPGDDGAAGYDGVPGTPGAPGGCSPGDGGQVDVTGPCGTFPGPAGLPGLPGSSG
LPGFKGPPGQKGSKGPLGEHGGKGETGEQGKGGRTGPPGFSGPRGELGVPGGNGSVGSPG
VRGVPGRYGSRGEKGAHGEIFGASSGSPGVPGQPGLQGNKGQTGDPGDQGYPGMGGMPGM
IGFKGDTGPLGLQGEEGRPGPAGKYGYPGDPGGAGLPGQPGSAGQPGFTGERGVEGDPGP
PGPIGLKGVPGPYGANGGTGEYGPSGELGESGQDGRPGVPGMKGYKGSPGMSGFEGNRGN
FGGKGFSGPGGDPGTMGQVGLKGLLGQSGVKGDRGLRGPSGNKPLIPAQMVVDMKGAKGD
FGNYGNQGFTGPRGLKGLPGVPGKEGSHGYPGKPSNNKGHRGELGAEGLLGIKGMPGPTG
NRGITGFWGMPGNKGINGGPGAYGASGETGRKGFKGEKGPRIDLPGTTGLRGEHGLPGDP
GQKGLSGQPGDWGMPGFGGIEGRRGESGNPGIIGYKGSDGQKGTPGNQGQKGFTGTPGKD
GHPGFPGFPGNKGFPGLKGLYGLHGLKGQKGVPGTPGLDTTGPTGEPGNKGQKGVDGDPN
SQPGFPGTVGLKGFQGPLGDRGQPGSSGLRGPVGLDGTPDRPGLIGDPGSHGPKGYPGFP
GANGFPGVDAPPGEKGVPGINGFPGIPGRKGLKGDRGSFGYRGPNGVSGKKGEKGEQGVM
GVPGIFGLKGERGQSGLKGNSGPTGFRGIPGNQGPLPIPVRVPGERGLSGPQGIKGPEGV
RGESGPQGPPGDTGFIGPIGQKGMPGIGGTPGTPGYRGESGQMGHPGLEGSEGHHGNPGI
HGLPGMPGRSISVGYLLVKHSQTEQVPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAG
SCLPRFNTMPFLYCNPGDLCYYASRNDKSYWLSTTAPIPMMPVVEGEIKPYISRCSVCEA
PSVAIAIHSQDITIPMCPAGWRSMWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTAPF
LECNGAKGTCHYFANKHSFWLTSIDESFHTEPSSETLKAGQLLSRISRCQVCMKNL
NT seq 5031 nt   +upstreamnt  +downstreamnt
atgagtgggaccatgcaaggacaacacgagagaggactgaagaacctgaggctgctgctt
ctgtgtcttttcattgccaccctcgcctctggagtgcacgcgggtgggaagaagcacagt
ggcccctgtggaggaagagactgcagcggaggctgtaaatgtttcccagagaaaggtgcc
aggggtggcccagggcctctaggtcctcagggctcctcagggcctccagggagaacagga
gatgcaggcattgaaggcccaaaggggcagaaaggtgaccccggccgtggtggctacatg
ggtccaaaaggaagtgtgggaatggccggcgttcctggttttgctggaaacgatggaatt
cctggccacccgggacaagctggcccccgggggaagccaggggccgacggctgtaacggg
acacatggagactccggttcatctgggcaacctggctataatggctcacctggttttcct
ggacaagcaggctggaagggacagaagggagacaccctggagctgagtgtgttcatgaag
cgcttcaggggagatccaggcatgccaggtttcaagggaatatatgggcctccaggaaac
ccaggtggagagggtaaccaaggctatccaggaccaaagggtccccaagggccttcaggt
ccccgtggaccaaagggcacaatgacccaagtgcttaaaggacacagaggaagccaaggg
gacatcggacaaccagggctgcagggaaactcaactcatcagcagattcagcccccctac
ggacccacgggactccgtggggagaaaggtctcaaaggagaaataggagatgtggctgac
aataaaggagaaactggagtgaagggattcccaggaccccagggcacatctggtgcagat
gggcgtcctggaccaaggggagattatggggaagcaggaccaacaggcagagatggtttt
aagggagtcagaggtgaaccaggagaactgatttcatcagaatctgtatggtcttggttt
tcaggaggtggtcctcccggtccccctggcaatcagggtcccgagggagagaggggcccg
gttggagaccaaggcattcccggacccccaggaccccctccctctgaatcacagcaacaa
gtttcgcacttctttgggccatttggtataaagggggagtcaggagagaagggcccagca
ggagatccaggactccctgctgacttggcaggacccccaggcaccaacgggcgcccaggg
tccagaggccctctgggacccaaaggatcatggattgagttcttcaagggttctgctggt
gggagaggaaggcccggcaatgcgggctctaaaggattgaaaggtgatcacgggctgtgt
gaatgcagcatcgtgaactctccatcggggcgacctgggcctgccggggagcgcggcgac
gctgggatgactggagagtttggtcgagaaggggatgtgggaaatccaggtccacatgga
gacttcggatcccctggatttcctgggctcaacggtgagccgggaccacaaggtcgaaaa
ggagaagcaagggtggtctccgggaaagcatatcctggagacgcaggggatcccgggcaa
aacggtgtgcagggaacatttggtgtttcaggccgaaatggttttcctggtatctctggg
atccgaggtcttccaggagaaggtaaaagaggacaatatggagacaaaggttactcaggt
cagcctggtcgacccggctcacccgggctaagtggacaagacggtgaagtccttgggggc
ttcaagggccaacgtggtctacctggagacgatggcgctgcaggttatgatggagttcca
ggaacacctggcgctccaggcggctgtagtccaggagatggaggacaggtggatgtaaca
ggtccttgtggcacttttcccggacctgctgggctacctggacttccaggttccagtgga
ttaccgggtttcaagggtcctccgggccaaaagggatcaaagggtccacttggagaacat
ggagggaaaggcgaaacaggagaacaaggcaaaggtggccgtactggaccaccaggtttt
tccggcccccgtggagagttgggggttcccggcggcaatggttcagtaggatcccctggt
gtgcgtggtgtgcccggcagatatggttcgcgaggtgaaaaaggtgctcacggagagatc
tttggagcatcgtcaggatcccccggtgtcccaggtcagccgggactgcaagggaataaa
ggccagactggagatccaggagatcaaggctatccaggaatgggcggcatgcctggtatg
atcggcttcaagggtgacactggtcctctgggtctgcagggggaggaagggaggcctggg
cctgcaggcaagtacggttaccctggagaccctgggggagcgggtctacctgggcagcca
ggcagtgccggacagccaggtttcactggagagaggggagttgagggagacccgggccct
ccaggtccaataggattaaaaggagtccctgggccatacggtgctaatggtggtaccgga
gagtacggcccatcaggtgaacttggagagtctggtcaagatggacgcccaggagttcca
ggaatgaagggatacaaaggatctcccggcatgtcaggctttgagggtaacaggggcaat
tttggggggaagggcttcagtgggccaggcggagacccaggaacgatgggccaagtcggc
ctaaaaggattgctgggtcaaagcggagtgaaaggtgatcgtggtttgagagggccctcc
gggaataagcctctcatccccgcccagatggttgttgacatgaagggagcgaagggggac
ttcggaaattatggaaatcaaggtttcaccgggccgagaggtcttaagggtttgcccggt
gtgcctggtaaagagggatctcacgggtatcctggaaagcccagcaataacaagggtcac
cgtggagaactaggtgcagaggggctgctgggaatcaaaggaatgccgggcccaactggg
aacagaggaattactgggttttggggaatgccaggcaacaagggcattaatggaggtcct
ggtgcctatggtgcatcaggcgaaacaggaaggaagggatttaaaggtgagaaaggccca
cgcatagaccttccaggaaccaccggattgagaggagagcatggtcttccaggagatcca
ggccagaaaggattatctggacaaccaggggactggggtatgcctggatttggtggaatt
gaagggagaaggggagagtctgggaatccaggaataatagggtacaaaggctctgatggg
cagaagggaactcctggtaaccaaggtcaaaaaggctttactggaactcctggaaaggac
ggacacccaggttttccaggcttcccaggaaacaaaggtttccctggcctgaagggtctt
tatggattacatggacttaaaggacaaaagggtgtccccggcacaccaggtctggatacc
actggaccaactggggaacccggaaacaaaggacagaagggagtagacggggaccccaac
agccagccaggttttcccggcacagtgggtttgaaaggctttcagggccctctaggtgac
cgaggtcaacctggatcgtcgggactccgaggccccgttggactagacgggactcctgac
agaccaggactcataggggaccctggctctcatggacctaaagggtacccaggtttccct
ggagcaaacggttttcctggtgttgatgctcctcctggggaaaaaggtgtaccgggaata
aatggttttcctggaatccctggaaggaaaggactcaaaggagatagaggttcctttgga
tacaggggaccaaacggtgtttctgggaagaaaggggaaaaaggagagcaaggagtgatg
ggcgtccccgggatctttggtttgaagggagaaagagggcaatctggcctaaaaggaaac
tctggacctacaggttttcgtggaataccaggaaaccagggtccccttccaattccagta
agagtcccaggagagagaggcctctcaggaccacagggtatcaaaggaccagagggggtc
agaggggaatcagggccacaggggccccctggcgatacaggtttcatcggacccatcggg
cagaagggcatgccggggattggcggtacaccaggaacgcctggataccgtggagagtcc
ggacaaatgggtcaccccggtctggaaggcagtgaaggtcaccacggcaaccctggtatc
catgggttacctggtatgccgggccgaagcatcagcgtgggatacctgctggtgaaacac
agtcagacagaacaggtgcccatgtgtcctgtgggcatgtccaaactgtgggacggctac
agtctgctgtacctcgagggccaggagaaggcccacaaccaggaccttggtttggctggc
tcctgcctcccacggttcaacaccatgcccttcctgtactgcaacccaggagacctttgt
tactatgccagcaggaatgataagtcctactggttgtcgaccaccgctcctattcccatg
atgcctgtggtagagggagagattaaaccgtacatcagccgctgctcagtatgtgaagct
ccatcagttgccatcgcaatccacagccaggacatcaccatccctatgtgtcctgcgggc
tggcgcagcatgtggatcggctactccttcctcatgcacacagcagcaggaaatgaaggc
ggaggtcagtctttgtcatcgcccggctcttgcctggaggacttccgcacagcaccgttc
cttgagtgtaacggggccaaaggcacatgccactactttgctaacaagcacagcttctgg
ctaacctccatcgatgagtcgttccacactgagccgtcatcagagacgctcaaagccggt
cagctgctgtcacgcatcagccgctgccaggtctgcatgaagaacttgtga

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