Pseudochaenichthys georgianus (South Georgia icefish): 117466276
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Entry
117466276 CDS
T09629
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04382
Cornified envelope formation
pgeo04510
Focal adhesion
pgeo04512
ECM-receptor interaction
pgeo04518
Integrin signaling
pgeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117466276 (col4a1)
04518 Integrin signaling
117466276 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117466276 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117466276 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117466276 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pgeo04147
]
117466276 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
pgeo00536
]
117466276 (col4a1)
Exosome [BR:
pgeo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117466276 (col4a1)
Glycosaminoglycan binding proteins [BR:
pgeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117466276 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117466276
NCBI-ProteinID:
XP_033965319
LinkDB
All DBs
Position
21:25542072..25586524
Genome browser
AA seq
1643 aa
AA seq
DB search
MLLSSGTLLLLLAALYSTVDLAGAEGCGASCGKCDCSGVKGAKGERGFNGLQGNMGFPGM
HGPEGPPGPMGPTGTFGESGAPGLKGVRGPSGLPGFPGNPGLPGINGNEGGPGSQGIPGC
NGTKGDRGLDGTSGFPGLQGPPGISGIPGMKGDPGGVIGIVPSRGDKGFAGTPGLPGTSG
FPGPVGPPGRTGFQGPKGDSGPPGPPGEKGDKLAFVSEKGEKGDPGFRGPPGPPGTTLGV
EGGRPTVHVPGPQGERGLKGDQGNKGFCVPHLNGIKGEAGPPGSKGTFGNGGYDGSKGEK
GFPGTAGFTGSQGEKGEKGPPGYGNGAPGPPGPSGNPGFQGVKGFPGPQGEAGPPGRHNE
GPRGETGQKGHFGEKGDRGLDGESLVGPPGQPGNPGLPGPAGPPLDPNECNNEKGAPGPA
GPPGLQGELGQKGDIGDTCVQCEASGSPGLPGPHGPKGDRGPPGTVGGKGQKGTSGSSGQ
TGTPGSQGVPGWIGATGAVGEPGDVLGVDGLKGEKGLPGLSGTPGRPGLDGLPGRDGFPG
VQGHKGESAREGIQGDRGLDGNPGLIGPPGERGPPGQPGFGRAGESGEKGSHGRHGTPGT
PGQLGVKGEPGQGESTPGPQGVPGAHGETGILGLQGDRGLQGDRGLPGFPGQKGEYGPQG
IGLPGPTGPKGINGMPGALGLPGETGRGGQDGLTGQSGRPGPKGEPGRGLPGPKGLQGQP
GITGFPGDKGGFGRPGIPGLEGQTGPTGDQGIQGDVGVPGPPGLVGVPGSPGKGSPGAPG
PPGPAGESGPHGGGGAKGDNGYPGSPGLDMPGPQGEKGQPGFPGTSGYKGLPGRTGLPGR
EGLIGTQGIKGEMGVIGTPGIPGFPGPPGTSGSHGLIGDPGITGPRGSIGESGLKGERGD
RGLQGPPGNMSEVDMEHMKGDKGDFGNRGDTGGTGEKGHRGLPGNPGMSGKNGESGSPGQ
PGEKGDSGFPGEPGNFGQSGQKGTVGEMGIPGLSGPQGTKGDTGTTGHTGFRGTDGQKGD
QGTGGDPGIGLPGTPGEKGQTGQPGFPGTAGERGLKGHEGMSGKAGLQGTKGNKGSIGYS
GQSGRPGEKGTPGLSGSAGETGPDGRPGEGGLQGPPGVPGEKGDPGIDGIPGSSGERGDL
GLSGQGFPGSPGVLGGTGDKGSPGFPGTPGHPGVSGIKGDKGLSGSHGPQGETGETGYPG
NSLEGPKGESGASGQTGVTGSPGVPGTSGGPGRGGPKGDKGGQGQPGFQGESGHKGDAGT
PGLPGQDGLPGLFGQKGERGLQGVPGFPGTRGQGGDIGFKGEFGDNGFQGEKGIDGPPGP
PGPHTYIKGDIGFPGPQGIPGPQGPYGLPGQKGHQGVTGVQGPKGEDGIPGYNGQAGSKG
NSGLPGPQGPRGHPGPPGPDGVPGQIGHTGPSSMDHGFLVTRHSQTVEVPTCPEGTRLIY
DGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEP
MPMNMAPITGQGIKPFISRCSVCEAPAMVIAVHSQTIMIPSCPHGWDSLWIGYSFVMHTS
AGAEGSGQALASPGSCMEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDEDMFTKPVPT
TLKAGNLRTHISRCQVCMKRTYT
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atgctgttatcgtccggcaccctgttactgctgctggcggctctctactccactgtggac
ctggcgggggctgagggctgcggggcttcatgtggaaaatgtgactgcagtggtgtgaaa
ggagcaaagggtgagcgtggattcaatggtcttcagggtaatatgggatttccagggatg
catggacctgaaggtcctcctggaccaatgggcccaacgggcacttttggtgaatctgga
gctcccgggctgaaaggagtgaggggtccttctggtctgccaggtttcccaggaaacccc
ggactaccgggcattaatggaaatgaaggtggacccggttcgcaaggtatcccaggatgc
aatgggaccaaaggagatagaggactggatggcacctctggttttcccggtcttcaagga
cctcccggcatctcaggaattcctggaatgaagggtgaccctggtggtgtgatcgggatt
gttccctcgagaggagacaaagggtttgctggcacacctggactacctggaacaagtgga
tttcctggaccagttggacctcccggacgaacaggctttcaaggacccaaaggagattct
ggcccccctggccctcctggagagaagggtgacaagctggcctttgtgagtgagaaagga
gagaagggtgatccaggatttcgtggcccccccggccctcctgggacaacactgggagtg
gaaggaggacgtcccacagtgcatgtacctggaccacagggtgaaagaggacttaaggga
gaccaaggaaacaaaggcttttgcgtccctcatctaaatggtatcaaaggtgaagctggc
cctcctggatcaaaaggaacatttggcaatggtggatatgatgggtcgaagggagaaaaa
ggctttcctggaactgctggattcactggttcccagggtgaaaagggagaaaaaggaccg
ccaggatatggtaatggtgcccctggtcctcccggcccaagtggtaacccagggttccaa
ggagtaaaaggttttcctggtcctcagggagaggcaggtcctccaggccggcacaatgag
gggcctcgtggagagacgggacagaaaggacactttggagagaaaggagacaggggactg
gatggagagtctctcgttggacctccgggacaacctggaaaccctggactccctggacca
gctggaccaccacttgaccctaatgaatgcaacaatgagaaaggagctcctggcccagct
ggacctccagggttacaaggagaattaggacagaaaggtgacataggagatacctgtgtt
caatgtgaagcttccggctcacctggattacctggcccacacggccctaaaggagatcgg
gggcctccagggacagtaggagggaagggacaaaagggtacctctggctcttctggacaa
actggaactcctggttctcaaggtgttcccgggtggattggagccactggtgctgttggc
gagccaggggacgttcttggagttgatgggttgaaaggagagaaaggtctacctggtctt
tctggtactccagggaggcccggcctggatggactgccggggagagatggtttccctggt
gtacaaggccacaaaggagaatcggccagggagggcatacagggtgaccgtggactagat
gggaaccctggtctgatcgggcctccaggagagaggggcccaccgggccagcctggcttc
ggtcgagcgggagagtctggagagaaaggcagtcatggaaggcacggaactcctggaact
cctggacaacttggtgttaaaggtgagccaggtcaaggtgagagcactcctggacctcag
ggagtacctggagcacacggcgaaactggcattcttggacttcaaggtgacagaggcctt
cagggagatcgagggttgcccggtttcccaggacagaagggtgaatatggaccccagggg
attggattacctggcccaactggtcctaaaggaatcaatggaatgccaggagctctagga
ttaccaggagagacaggaagaggtggacaggatggcttgactggacaaagtggtagacct
ggaccaaaaggtgagccagggcgaggtcttccaggcccaaaaggtttgcaaggccaacca
ggaattactggcttcccgggagataagggtggctttggacgacctggtattcctggacta
gaaggtcagacaggacctacgggagatcagggaatccaaggtgatgtgggagtcccagga
cctcctggactggtcggcgtgccaggttctccaggtaaaggttcacccggagcccccgga
ccaccaggaccagctggagagtctggaccacatggtggaggaggtgcaaagggagacaat
ggctaccccggttctcctggtctggacatgccggggcctcagggagagaagggacaaccc
gggttcccaggaacgtcaggctataaaggactgcctggacgaacaggtctacctggcagg
gaaggactcattggaacacaaggtattaaaggtgaaatgggtgtcatagggacaccggga
ataccaggatttcctggaccacctggtacgtctggatctcatggactgataggtgatcca
ggtattactgggccaagaggtagtattggagagtcaggactcaaaggagagaggggagat
cgaggtctgcagggtcctcctggaaacatgagtgaagtggacatggagcacatgaagggg
gataagggagactttggaaacagaggtgacactgggggcactggagagaaaggccaccga
ggacttcctggtaaccctggaatgtcaggcaaaaatggagagtctggatcacctggccaa
ccaggggagaaaggagactctggttttcctggagagccgggcaatttcggacaatctgga
cagaaaggcactgtaggagagatgggaatccccggtctgtctggtccacagggtactaaa
ggagatactggtacaacaggacataccggattcagaggtacagatggacagaaaggtgac
cagggaacaggtggtgacccaggtattgggctcccaggaactccaggagaaaagggtcag
acaggccagcccggattcccaggaactgcaggagagaggggtctgaagggtcacgagggg
atgtccggcaaggcaggactgcaaggaaccaagggcaacaagggaagcatcgggtattca
ggtcagtcaggtagaccaggtgagaagggaactcctgggctgtcggggtctgcaggagaa
actggtcctgatggtcgccctggggaaggcggcttgcaaggacctcctggtgttcctgga
gagaagggagatcctggaatagatggcatcccaggatcctcaggggaaagaggagaccta
ggtttatctggccaaggtttccctggatctcctggagtgcttggtggcacaggtgacaaa
ggcagtcctggtttccctggcactccaggtcatcctggcgtctctggtatcaaaggagac
aagggactttcaggctcacacggaccccagggcgagacaggcgagacggggtacccaggt
aactccctcgagggccctaagggagagtcgggagcatcaggacaaaccggagtaacagga
tctccaggagtaccagggacctctggtgggccaggcagagggggccctaagggagacaaa
ggaggccagggtcagcctggtttccagggagagtcgggacataagggtgatgctggaact
cctggactccctggacaagatggccttccaggtctttttggacagaagggagagagggga
ttgcagggagtccctggcttcccaggtacaaggggtcaagggggtgacattggattcaaa
ggagaatttggagacaatggattccaaggagagaagggcattgatggccccccaggtccc
cctggccctcacacctacatcaaaggagacattgggtttccaggtcctcagggcataccg
ggtccccaggggccatatgggctccctggacaaaaaggacatcaaggtgtgacaggtgtt
caagggccaaaaggtgaagatggcattcctggatataatggtcaggctggatccaaagga
aactctggtcttccagggccacagggacccagaggacaccctggccccccaggacctgat
ggtgttccaggtcaaattggtcacaccgggccctcatccatggatcacgggttcctggta
acccgccacagccaaacggtggaggttccaacctgtcctgaaggaacccggctcatatat
gacggctattccttgctctacgtacaaggcaacgaacgctcacatggacaggacttgggt
acggccggtagctgtctgaggaagttcagccccatgcccttcctgttctgcaacatcaac
aatgtgtgcaactttgcctcccgtaacgattactcctactggctcacctcccctgagcca
atgcccatgaacatggcacctatcaccggtcaaggcatcaaacccttcatcagcagatgt
tctgtgtgtgaagctccagccatggtgatagcagttcacagtcagaccatcatgatccca
tcatgcccccatggctgggactctctctggattggatactctttcgtcatgcacaccagt
gccggtgcagagggctctggccaggctctggcgtctcctggttcctgtatggaggagttc
cgcagtgctcccttcatcgagtgtcacggtcgtggaacctgcaactactatgctaactcc
tacagcttttggcttgccaccattgaagatgaggacatgtttacgaaacctgttccaaca
acgctaaaagccggaaatctccgaacacacataagccgctgtcaggtgtgcatgaagagg
acatatacataa
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