Pseudochaenichthys georgianus (South Georgia icefish): 117466459
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Entry
117466459 CDS
T09629
Symbol
xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117466459 (xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgeo03400
]
117466459 (xrcc5)
DNA repair and recombination proteins [BR:
pgeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
117466459 (xrcc5)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
VWA
DUF6005
Motif
Other DBs
NCBI-GeneID:
117466459
NCBI-ProteinID:
XP_071063232
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Position
21:complement(24959273..24969037)
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AA seq
733 aa
AA seq
DB search
MAGSKSALVLCMDVGFSMSNSAPGEEPPFELAKKVIQKFVQRQVFKETKDELALVLFGTD
STNNSLEQDDQYQHISVHRHLTVPDFELLEEIENQIHPESQQADWLDALVVCMDLLKKET
QGKKCDRLNVVLLTDLNTQASSEQLDVIIENLKQADITLQFFLPFPAEEDKEVGGDAGEG
GPGHPGTGKGLSREQQSGLDMVKHIMLSLDEEDGLNEIYSFRKAIEQLCMFKRIERKPMA
WPCQLTIGSCLSIRIVGYKAVTEEKLKKIWATVDAQSNQKEDVKRETVYCLDDDNETEVP
KEDTIQGFRYGSDIIPFDKIDQEHMKYKHDGKSFAVLGFAKQNMIRRHQFMGTQVIKIFP
GRDDEHAGVALSALIRALDELNMVAIIRYAYDRRCNPQVGAAFPCIKLDYECLMYVQLPF
MEDLRQYTFPSLENNKKFTPSDTQLSAVDSLIDSMMLVEKDENGDEKDMYKVHNIPNPSF
QRHFQCVHHRAVCPGTPLPPMEPWLKAVLERPDVITERCQAPLEEVKRKFPLTEVEKKKK
VKTSAQIFGKDSEEPGAKKAKEEEDEEDYSLANIAEGPVTSVGSVDPARDFRTLLKKKSL
SFGEVCQQLTHRIEQLLGNKNTHYYMKSITCIEAFREQSVKLGDASLYNGYLQSLKRSIP
NRGLEVFWDLLVQDAITLISKDEVEGSTVSKSESNQFLVTEEKKEEAAAPPAEDTGDVDD
LASLILTFQVLNI
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggcaggttccaaatcagcgttggtgttgtgcatggatgttgggttctccatgtccaac
tccgccccgggtgaagagcctccctttgaacttgccaaaaaagtaattcagaagtttgtc
cagcgccaggtttttaaagagaccaaggatgagctggctttagttctgtttggcacagac
tccaccaacaactcactggagcaggacgaccagtaccagcacatcagcgtgcatcgtcac
ctcacggtgcctgactttgagcttctggaggaaatagagaatcagatccatccagagagt
cagcaggctgattggctggatgctcttgttgtgtgcatggatctcctcaagaaagaaaca
caggggaaaaagtgtgatcgtctcaacgttgtcctcctgactgacctcaacacgcaggcc
agctcagagcagctcgatgtcattattgaaaacctgaaacaagccgacatcaccctgcag
ttctttttgcccttccctgcggaggaagataaagaggttggaggagatgctggcgaagga
ggccccggtcacccaggcacaggaaaaggtctgtccagggaacagcagagtggcctggac
atggtgaaacacatcatgctgagcctggatgaggaggacggcttgaatgaaatttactcc
ttcaggaaagcaatcgagcagctgtgcatgttcaagcgcatcgagaggaaacccatggcc
tggccctgtcagctgaccatcggcagctgtctgtctatccgtattgttggatacaaagca
gtgacggaagagaaactgaagaagatatgggctacagtcgatgctcaatcaaaccagaag
gaggacgtgaagagagagactgtctactgcctggatgatgacaatgagacagaggtgcca
aaggaggataccatccaaggttttcgttatggaagtgatattattcccttcgacaaaatt
gatcaagagcatatgaaatacaagcacgacgggaaaagctttgctgttctcggattcgcc
aaacagaacatgatacgtcgccatcagttcatggggactcaagtcatcaagatttttcct
ggcagagatgatgagcatgcaggagttgcactgtccgctctcatccgagcactagatgaa
ctcaacatggtggccattatacgttacgcgtatgaccgacgctgcaaccctcaagtagga
gcagccttcccgtgcatcaagctggactatgagtgcctgatgtacgttcagctgcccttc
atggaagacctgagacagtatacattcccttcccttgaaaacaacaaaaagttcactccg
tcagacacccagctgtctgctgtggactctcttattgactccatgatgctggtagagaag
gatgaaaacggggatgaaaaggatatgtacaaggtccataacattcccaacccttccttc
cagaggcacttccagtgtgtgcatcatcgggcagtatgtcccggcaccccgcttcccccc
atggagccgtggctgaaggctgttctcgagcgccctgatgtcattactgaacgctgccag
gctccactcgaggaggtgaagaggaagtttcctctcacagaagtggagaagaagaagaag
gtcaagactagtgcacagatatttggcaaagactctgaggagccaggtgccaagaaggcc
aaagaagaggaagacgaggaggattatagcctggctaacatcgctgaaggccctgttact
tcggtgggaagcgtggatccagccagagacttccggactctgctcaagaagaagagtctt
tcatttggagaggtctgtcagcaactgactcacaggatagagcagttacttggcaacaag
aacacacactactacatgaaaagcatcacctgcatcgaggcttttagagagcagtctgtt
aagctgggggatgccagtctgtacaatggctacctgcagtccctgaaaagaagcatccca
aaccgagggctggaggtcttctgggacctgcttgttcaagatgccataacactgatcagc
aaggacgaggttgaaggaagcactgtgtccaaaagtgaatctaatcagtttctggttact
gaggagaagaaggaagaggcagctgcacctcctgctgaagatactggagatgttgatgac
ttggcaagtttaattctgacttttcaggttttaaatatttaa
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