Pseudochaenichthys georgianus (South Georgia icefish): 117466469
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Entry
117466469 CDS
T09629
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117466469 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgeo04131
]
117466469 (tgfbrap1)
Membrane trafficking [BR:
pgeo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117466469 (tgfbrap1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
Prok-RING_1
DUF7742
Motif
Other DBs
NCBI-GeneID:
117466469
NCBI-ProteinID:
XP_033965618
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Position
3:31367832..31381192
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AA seq
875 aa
AA seq
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MSVKAFELVPAVERDLLMGDKARINIECIECCGKHLYMGTNDCFIHHFLLDEVTSSKGKL
TYSARKLLHKYLGLKKPVAELRAASALERLIVLCDGIVFLVDMVTLETVPSAAGGGAKIR
GVTAFCVNENPVNGDPFCVEMGVISSKKRTVQIYMVYEDRVQLVKEVTTPEQPCAVSVDG
YFLCLALATQYMILNYNTGASQDLFPYNSEDRRPIVKRIGREEFLLAAPGGLGMFANAEG
VSQRAPVNWSESVIGAAVSFPYVVALDESFITIHSMLDQQLKQTLSFRDGHILQDFEGKV
ILASTKAVYVLVPLPLERQIQDLLASHRVEEALILTEGAQQNIPKDKFQILHKRILQQAG
FIQFGQLQFLEAKEHFRKGQLDVRELISLYPLLLPASSSFTRCHPPLHEFADLNHLAQGD
QEKVLRCKKFLISYLGEVRSTEVANGCREDVDTALLKLYAEQDHDSLLDLLASDNACLLA
DSVPWLEKYHKYFALGLLYHYNSQDSAALQLWIRVVDGDLQDSTRSGLYEYIVDFLCSCS
NPDLVWKHADWALAKDPTIGVHIFTKRPVSKDVTELNPEEAITYLGKHSQALLLFLEHLV
LERKIKKEKFHTHLAVLYLERVLSLLSEAPADEERLSRARERLQALLRESNLYQAQFLLG
KMENCEQLLLERATLHGKLEENGKALHILVHKLKDFSSAEAFCVWASCCRDSAYQQQLFH
LLLEVYLDRSLPGKSQAAAGGGELEMAAVDLLNRHGEVFDAVRVLRMLPEGWSLQLLRPF
LGRAVRASMHAGRTAQIAVGLAQSENLQLLHDRLKDRKKPIFVSEKKGCHLCHNTFSEPD
VVCLPGGAPVHTHCVAQRVRDSPTKRQLTNSSNHT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcgtttgagcttgtccccgctgtggagagagatctcctcatgggggac
aaggctcgcatcaacatcgagtgcatcgaatgctgtggaaagcacttgtacatgggcacc
aacgactgcttcatccaccacttcctgctggacgaggtcacttcctccaaagggaaactg
acctactcggcgcggaagctgctgcacaaatatctaggcctcaagaaacccgttgctgag
ctgcgtgccgcctccgccttagagcgtctgattgtgctctgcgatgggattgtgttcctt
gtcgacatggtgacactggagaccgtgccgtcggcagctggaggcggagccaagatcaga
ggagtgacagcgttctgcgttaacgagaacccggtgaacggggatccattctgtgtggaa
atgggtgtgatctcctccaagaaacggacggtgcagatttacatggtgtatgaggacaga
gtgcagctggtcaaagaggtgaccacccctgagcagccctgtgctgtcagtgtggacggt
tacttcctgtgcctggccctcgctacacagtacatgattctgaactacaacacaggagcc
tcccaagacctcttcccttacaacagcgaggacaggagacccattgtgaagaggatcgga
agggaggagttcctcttagcagcaccaggtggtctggggatgtttgccaatgcagaagga
gtatctcagcgagctccagtcaactggtcggagagcgtgattggtgctgccgtgagtttt
ccgtacgtggtggctttggatgaaagcttcatcacaatccacagcatgctggaccaacaa
ctaaaacaaaccctttccttcagggatggacacattctgcaagactttgaaggaaaggtc
attctggcgtccactaaggccgtgtacgtgctggtcccgctgcctcttgagagacagatc
caggacctactggccagtcacagagtggaggaggcgctcatcctcacagaaggagcacag
caaaatatccccaaagacaagttccagattttgcacaaaaggatcctccagcaggcaggg
ttcatacagtttggccagcttcagtttctggaagcaaaggaacacttcaggaagggtcag
ctggacgttcgggagctgatctctctctaccctctgctgctgccagcttcctcttccttc
acacgctgccaccctcctcttcacgagtttgcagacctgaaccacctggcacagggcgac
caggagaaagtgctgcgatgcaagaaattcctcatcagttatttgggagaggtacgaagc
acagaggtggccaatggctgcagagaggacgtggacacggctctgctgaagctgtacgct
gaacaggaccacgacagcctcctcgacctgctagcttcagacaacgcctgcctgctagca
gacagcgtcccgtggctggagaaatatcacaaatattttgcacttgggcttctctatcat
tacaatagtcaggattctgcagcacttcagctgtggatccgcgttgtagacggggatctg
caggactccaccaggtccggcctctatgagtacatcgtggacttcctctgctcctgctcc
aacccggacctcgtgtggaagcatgcagactgggccttggctaaagatcccacgataggt
gtccacatcttcactaagaggcctgtcagtaaggatgtgacggagctgaaccctgaggag
gccatcacatatctggggaagcacagccaggcgctgcttctcttcctggaacacctggtg
ctggagagaaagataaagaaagagaagttccacactcacctggccgtgttgtacctggag
agagttctgtcgctgctgtcggaggcgccagcagatgaagagcgcctcagcagagcgaga
gagcggctccaggctctgctcagggagtccaacctttaccaggcacagttccttctaggt
aagatggagaactgtgaacagctgctgctggagcgtgcaacactacatggtaagctggag
gagaatggcaaagctctgcacatattggtgcacaagctcaaagacttctcgtccgctgag
gccttctgcgtctgggcctcttgttgtcgggattctgcataccaacagcagctctttcac
ctgctcctggaggtgtatctagaccggagccttcctggaaagtcccaggcagcagcaggg
ggtggagagctggagatggcggcagtggatctcctgaatcgccatggcgaggtgttcgat
gcagtccgtgtgctgcgcatgctccctgagggctggtccctgcagctgctgcggcccttc
ctgggccgagccgtcagggccagcatgcacgccggccgcaccgcgcagatcgccgtgggg
ctcgcccagtccgaaaacctccaactgctccacgacaggttgaaagaccggaagaaaccg
atctttgtgtctgagaagaaaggatgccacctgtgccacaacaccttcagcgagcccgac
gtggtgtgtctgccaggtggagcgcctgtccacacacactgtgtcgcccagagagtaaga
gactctcccactaagagacagttaactaatagcagtaaccacacgtga
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