Pseudochaenichthys georgianus (South Georgia icefish): 117466500
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Entry
117466500 CDS
T09629
Name
(RefSeq) dynein, cytoplasmic 1, intermediate chain 2a-like isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04145
Phagosome
pgeo04814
Motor proteins
pgeo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
117466500
09142 Cell motility
04814 Motor proteins
117466500
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117466500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117466500
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pgeo04812
]
117466500
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
117466500
Cytoskeleton proteins [BR:
pgeo04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
117466500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR5
WD40
Dynein_IC2
Beta-prop_EML
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
WD40_WDHD1_1st
Beta-prop_RIG_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_IP5PC_F
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_WDR41
Nbas_N
Beta-prop_DCAF4
CDRT4
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
117466500
NCBI-ProteinID:
XP_033965666
LinkDB
All DBs
Position
21:complement(29095508..29119238)
Genome browser
AA seq
631 aa
AA seq
DB search
MSDKSELKAELERKKQRLAQIREEKKRKEEERKKQAADQLKDAANHQDDTDLEKKRRETE
AMLQSMGITQDTPAVPPPISPTPKSAGTPSEAGSQDSDGAVGPRTLHWDSDPSTLQLHSD
SELGRGTPKLGMAKVTQVDFPPRETVSYTKETQTPVVTQQKEAEEEEEEEEEESAPVEAA
VETQTEKPDQKEEEEAAPHELTEEEKLQILHSDDFANFFDQSTRIIERALSEHVDLFFDY
SGRDLEEKEGEIQAGTKLSLNRQFMDERWSKHRVVTCLDWSLQYPELLLASYNNNEEAPH
EPDGVALVWNMKYKKATPEYVFHCQSAVMSAAFAKFHPNVVVGGTYSGQIVLWDNRSNKR
TPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSQPQDSMELVFK
QSKAVAVTSMSFPLGDVNNFAVGSEDGSVYMSCRHGSKAGISEMFEGHQGPITGIDCHTA
AGPLDFSHLFVTSSFDWTVKLWSTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGVG
HLDLWNLNNDTEVPTASVTVEGNPALNRVRWAHSGKEIAVGDSDGRVLVYDVGEQTAVPR
NDEWTRFVRTLAEINENRDDAEELAAQHLAA
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaaaagtgagctgaaagcagagcttgaaaggaagaagcaacgcctggctcaa
atcagagaggagaagaaaaggaaggaggaggagcgcaagaagcaagcggcggaccaattg
aaagatgctgcaaatcaccaggatgatacagacctggagaaaaaaagacgtgagacggag
gctatgctacagagtatgggcataacccaagatactcctgctgtccctcctcccatctcc
ccaactcccaaatcggcgggcacaccgagtgaggcagggagccaagactctgatggagcc
gtgggacccaggactctgcactgggactctgacccgtccactcttcaacttcactctgat
tctgagctggggcgaggaactccaaaactaggaatggccaaagtcacacaagtggacttc
cctccacgtgagactgtgtcctacactaaagagacccagacacctgtcgtgactcagcaa
aaagaagctgaggaagaagaagaagaagaggaggaggaaagtgctccagtcgaagcagca
gtggagactcagactgagaaaccggaccagaaagaggaggaggaagcagccccccacgag
ctgacagaggaggaaaaactccagatcctgcactccgacgattttgcgaatttctttgac
cagagcactcgcattattgagcgagctctgtcggagcatgtggacctcttcttcgactac
agcggtcgtgacctggaggaaaaggagggtgaaatccaggccggtacaaagctgtccctc
aacaggcagttcatggatgagcgctggtccaaacatcgcgtcgtcacctgcctggactgg
tccctgcagtatcctgaactgctgcttgcctcatacaacaacaacgaggaggctcctcac
gagccagacggcgtggccttagtgtggaacatgaagtacaagaaggccacaccggagtac
gtcttccactgtcagtctgctgtaatgtcggctgcttttgccaagttccaccccaacgtt
gtggtggggggtacgtactcgggacagatcgtactgtgggataaccggagcaacaagagg
accccggtgcagaggacccccctgtcagcagcggctcacacgcaccctgtgtactgtgtg
aatgtggtcggcacccagaacgcccacaacctgatcagcatctccaccgacggcaagatc
tgctcctggagtctggacatgctctctcagccacaggacagcatggagctggtgttcaag
cagtccaaagctgtagctgtcacctccatgtctttccctctcggagatgtcaacaatttt
gcggtgggcagcgaggatggctccgtctacatgtcgtgtcgtcatggaagcaaagcgggc
atcagcgagatgtttgagggccaccaggggcccatcacagggatcgactgccacacagct
gcagggcctctggacttctcccacctgtttgtcacctcctccttcgactggactgtcaag
ctgtggagcaccaagaacaacaagccgctgtactcatttgaagataactcggattacgta
tatgacgtcatgtggtctccgactcaccctgctctgtttgcttgtgtggacggagtgggt
catctggacctgtggaacctcaacaacgacacagaggttcctaccgccagcgtcacagtg
gagggtaacccagctctgaacagagtgaggtgggctcactctggcaaagaaatcgccgtg
ggagactctgatggacgagttcttgtgtatgatgtcggagagcaaactgcggttccacga
aacgacgagtggacccgctttgtccgcacgctggcagagatcaacgagaacagagacgat
gcggaggagctggcggctcagcatctggccgcctga
DBGET
integrated database retrieval system
