KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117466669
Entry
117466669         CDS       T09629                                 
Symbol
lamp1b
Name
(RefSeq) lysosome-associated membrane glycoprotein 1b
  KO
K06528  lysosomal-associated membrane protein 1/2
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03272  Virion - Hepatitis viruses
pgeo03273  Virion - Lassa virus and SFTS virus
pgeo04140  Autophagy - animal
pgeo04142  Lysosome
pgeo04145  Phagosome
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03273 Virion - Lassa virus and SFTS virus
    117466669 (lamp1b)
   03272 Virion - Hepatitis viruses
    117466669 (lamp1b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    117466669 (lamp1b)
   04142 Lysosome
    117466669 (lamp1b)
   04140 Autophagy - animal
    117466669 (lamp1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pgeo04131]
    117466669 (lamp1b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pgeo04147]
    117466669 (lamp1b)
   04090 CD molecules [BR:pgeo04090]
    117466669 (lamp1b)
Membrane trafficking [BR:pgeo04131]
 Endosome - Lysosome transport
  Others
   Lysosomal membrane proteins
    117466669 (lamp1b)
 Autophagy
  Chaperone mediated autophagy (CMA)
   Cargo receptors
    117466669 (lamp1b)
  Other autophagy associated proteins
   RNautophagy/DNautophagy
    117466669 (lamp1b)
Exosome [BR:pgeo04147]
 Exosomal proteins
  Exosomal proteins of hepatic cells
   117466669 (lamp1b)
CD molecules [BR:pgeo04090]
 Proteins
  117466669 (lamp1b)
SSDB
Motif
Pfam: Lamp2-like_luminal Lamp2_2nd VAS1_LD DUF5455
Other DBs
NCBI-GeneID: 117466669
NCBI-ProteinID: XP_033965944
LinkDB
Position
21:complement(33580176..33586110)
AA seq 241 aa
MTQIGAVQSWWLGVTLQLILAGVLLQGFAAAQTTAAMRPEKGIYVVSSSNGTACLLASMG
LQLNITFNSVSQNKTVRNIVNLQPNVTKSSGSCDADTASLRLSTDAEKTNLTFFFSLNTT
SNKYHLSNVSLSAAWPDMKEPVSADNSSLDFLRGTLGFSYMCREQQTLTVSPDLSINTFQ
VQVQPFGVSGDQFGAAEECQLDEDDMLIPIIVGAALAGLVLIVLLAYLIGRKRSHAGYQT
I
NT seq 726 nt   +upstreamnt  +downstreamnt
atgactcagatcggtgctgttcagtcatggtggctgggagtaacgttacagttgatttta
gctggcgtcctgctccagggttttgctgctgctcagacgacggctgccatgagacctgag
aagggtatctatgtggtgagcagcagcaacgggacggcctgtttactggcctccatgggt
ctccagctcaacatcaccttcaactctgtgtcccagaataagactgtgcggaatattgtg
aacctccagccgaatgtgacaaagtcctctggatcatgtgacgcagacaccgcttccctg
cgactctcaaccgatgcagagaagaccaacctcaccttcttcttctccctgaatactacg
tccaataagtaccacctgagtaacgtgtctctgtctgcagcatggccagacatgaaagag
cccgtctcagctgataacagcagtctggacttcctgcgcggcaccctggggttctcctac
atgtgtcgtgagcagcagactctgaccgtgtccccggatctgtccatcaacaccttccag
gtgcaggtgcagcccttcggcgtctcgggagatcagttcggagcagcggaggagtgccag
ttggatgaagacgacatgttgatccccatcatcgtcggagcggctctcgcgggtctcgtc
ctcatcgtgctgctggcgtacctcatcggccggaagaggagccacgccggctaccagacc
atctga

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