Pseudochaenichthys georgianus (South Georgia icefish): 117466748
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Entry
117466748 CDS
T09629
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117466748 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117466748 (bard1)
04121 Ubiquitin system [BR:
pgeo04121
]
117466748 (bard1)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117466748 (bard1)
03400 DNA repair and recombination proteins [BR:
pgeo03400
]
117466748 (bard1)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
117466748 (bard1)
Ubiquitin system [BR:
pgeo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
117466748 (bard1)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117466748 (bard1)
DNA repair and recombination proteins [BR:
pgeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117466748 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_3
Ank_5
Ank_4
BRCT_2
BRCT
zf-RING_5
zf-RING_UBOX
zf-RING_10
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
117466748
NCBI-ProteinID:
XP_033966066
LinkDB
All DBs
Position
21:complement(22085779..22117855)
Genome browser
AA seq
794 aa
AA seq
DB search
MIMEYDVVVPTQDWKNTKEAVANFRQLLLCSKCSNVMTEPVCLGMCEHMLCRSCAGPGAG
DGCVVCQSPAWVKDIQINKQLSSIIHLFSGLESLLNPTEQPETSLAEIQTPPHSPVLKHK
KNIKIWFSPRSRKVRCTVEKPSEVTVAESTSSGETAAAQPDALTAPPQDLSVFNFTSSSQ
DSGSSSPERSKNEEGKKRTKRNASSCEVMARVPMRAPRILSRHQIKKNRLEAINHKWEIT
EKMDALEENELSRDEGPRKSSKRVTFLSPVVMSDETLTEVPQGSTDDLGTTRESLSGGSS
CVLNDQTPPGQEMTDSVDKSPPDTQIPEKRPDESPLKHSPKRSRLEEEGATLETTPKRPR
ASPGRRGRSQMSPAVLSPFSTSPKGDKSVKNSRKEKGASPIVPSPAGRRSPRSPSASVGR
PPSGIPAVMKRNHKGESPLHLAAIKGDVEAVKAFLEQGADPNLKDNAGWTPLHEACNLGH
LPVVEVLVSGGALLNTPGYKNDSPLHDAVRNRHPAIVKLLLQQGASQNVLNRCGKRPADY
AASPEMLEIFQEASEGNQCAKTSLSPSALSMVSDCVRRDEMAVFLTSKLSQAERLQVAKL
GELLEGRMADTFSGSVSHVVVPEGHMPTTSSTLMGLLAGCWVVKCSWVEACLQAGEWMPE
NEHEAGEGPQRSRINRCSLLPLLFDGCFFFLLGSFKAPSKDKLTKLLREGGGQLLIRQPK
PDSDVTQTLNAAAYHALPGSDQALCTQYIIFDRQCPHKPPAVRRGKVWSAPSNWIIDCIA
AFRLLPVSHPQTSV
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgataatggaatatgatgtcgtcgttcctacacaggattggaagaacactaaggaggcg
gttgcgaactttcgacaacttctgctttgctccaaatgctcaaatgtaatgacggagcct
gtgtgtctaggaatgtgcgagcatatgctgtgcaggtcctgtgcgggccccggggccgga
gatggctgcgtagtgtgtcagagtcctgcgtgggtgaaggacattcaaatcaacaagcag
ctcagcagcatcatacatctcttcagcgggttggagtccctgctcaatcccacagaacaa
ccagagacgtctctagctgagatccaaactccacctcatagtcctgtcctcaaacacaag
aaaaacatcaagatctggttcagcccccgaagccgcaaggtccgctgcaccgtggagaag
ccttcagaggtcaccgtagcggagagcacgtcttctggagaaacagccgcagcacagcca
gacgcccttactgctccacctcaggacttgtcagttttcaatttcacctcgtcctcccaa
gactcaggctcttcctctcctgaacgaagcaaaaatgaagaagggaagaagagaactaag
cgaaatgcttcgagctgtgaggtgatggcgcgtgtgcccatgagggccccacggatacta
agcaggcatcagataaagaagaacaggctggaggctataaaccataaatgggagattacc
gagaagatggatgctttagaggaaaatgagctgtcccgcgatgaagggcccagaaagtcc
agcaaaagagttaccttcctaagccccgttgtcatgtctgacgagactctgactgaagtg
ccacaggggagcactgatgacctcggcaccacgagggagagtctctcaggaggcagcagc
tgtgtactgaatgaccaaacaccgcctggtcaggaaatgacagacagtgtcgacaagtca
ccgcctgacactcagattcctgaaaaacgtcctgacgaatctcccctaaagcattcacca
aagagatccagactggaggaggagggtgccactttggagaccacaccaaaacggccaagg
gcttccccaggcaggcgggggagatcccagatgtctccagctgtcctgagccctttttcg
actagccccaaaggtgataaaagtgtcaaaaactcaagaaaagagaaaggcgccagcccg
attgtcccatccccagctggaagaaggtctccccgttctcccagtgcgtctgttggacgg
cccccctcggggatccctgcagtcatgaagaggaaccacaagggagaatctccgctccat
ctagctgctataaagggcgacgtggaggctgtcaaggcattcctggagcagggcgctgac
cccaacctgaaggataatgctgggtggacccctctgcatgaggcgtgtaacctgggtcac
ctgccggttgtggaggtgttggtctcagggggggccctgttgaatactcccggctacaaa
aatgactctccactccacgatgctgtgaggaaccgacacccagccatcgtcaaactgctg
ctgcagcaaggcgcctcgcagaacgtacttaatcggtgtggaaagcggcctgcagattac
gcagcgagtccagagatgctggagatcttccaggaagcctcagaagggaaccaatgtgca
aagacatctctcagcccctctgctctctctatggtgagcgactgtgtgaggagggatgaa
atggccgtgtttctgacctctaagctgtcacaggcagaacggctccaagtggccaaactg
ggagagctactggaagggaggatggccgacaccttctctggctcagtgagccatgtcgtg
gtgccagaaggacacatgcccaccaccagctccaccctcatgggtcttcttgctggctgc
tgggttgtcaaatgcagctgggtggaggcatgtctgcaggcaggcgagtggatgcctgaa
aatgagcacgaagcgggagaaggcccacagcgaagtcgcatcaacagatgcagcttgctc
ccactgctcttcgatggctgtttcttcttcctccttggctccttcaaagcgccgtccaaa
gacaagctcaccaagctgctcagggagggggggggtcagctcctgatccggcagcccaag
cccgacagcgacgtgacgcagaccctgaacgctgcggcctaccacgctctgccgggctcc
gaccaggccctctgcacccagtacatcatctttgaccgccagtgcccccacaagccacca
gcggtgaggaggggtaaggtgtggtccgctccctccaactggatcatcgactgcatcgct
gccttccgactcctccccgtgtctcaccctcaaacatcggtttaa
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