Pseudochaenichthys georgianus (South Georgia icefish): 117467593
Help
Entry
117467593 CDS
T09629
Symbol
cpsf3
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117467593 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgeo03021
]
117467593 (cpsf3)
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117467593 (cpsf3)
Transcription machinery [BR:
pgeo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117467593 (cpsf3)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117467593 (cpsf3)
U7-dependent histone pre-mRNA processing factors
117467593 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_3
Lactamase_B_2
DUF1611
Motif
Other DBs
NCBI-GeneID:
117467593
NCBI-ProteinID:
XP_033967205
LinkDB
All DBs
Position
22:14313486..14320848
Genome browser
AA seq
667 aa
AA seq
DB search
MAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEI
DLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYT
ETDLEVSMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKEDRHLMAAEIP
SVKPDILIIESTHGTHIHEKREEREARFCNTVHDIVNREGHCLIPVFALGRAQELLLILD
EYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAININTPFVFKHTSNLKSM
DHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEI
TTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHREQNEMARLKAALIRE
YEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADEKCVQGQRVSGILVKKNFNYHI
LNPSDLSTYTELAMGTVKQTQAIPFTGPYSLLVCHLRSLTGEVEELDGMEKHTLXIFLNI
TLIHEAGMVLLEWLANPLNDVYADAVTTVVLEVQSNPKAQKAMETQSAILDMEVFQNRLG
VMLQDMFGLDCVDFSDGKNVSXDGKTVHIFLETRSVCYEDESTDDDSLREMVELSVQRLY
DALNPVI
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggagagcgaccagctcctaattcgtccactaggtgctggtcaggaggttggg
agatcatgcatcattctggagttcaaaggaaggaaaattatgctggactgtggtatccac
cctggcttggagggaatggatgctctcccgtacatagacttgatcgacccggctgagata
gacctgctgctcatcagccatttccacttggatcactgtggagctctgccctggttcctc
cagaagaccagctttaaaggcaggaccttcatgacccacgccactaaggccatctaccgc
tggctactgtcggactacgtcaaagtcagcaacatttctgcagatgacatgctgtacact
gagactgacctggaggtgagcatggataagattgagaccatcaacttccacgaggtgaag
gaggtggctggaataaagttctggtgctaccacgctggccatgtgctgggagccgccatg
ttcatgatcgaaatagccggagtcaaggaagacaggcatctgatggcagcggagatcccc
agtgtcaaaccggacatcctaatcatagagtcaacccatggcacgcacatccatgagaag
agggaggagcgggaggctcggttctgtaacacagtccatgacattgtcaacagagaaggt
cattgtttaatccctgtgttcgctttgggccgggcccaggagctgctgctcatcctggat
gaatactggcagaaccaccctgagctccatgacatccccatctactacgcttcatccctg
gccaagaagtgcatggccgtgtaccagacgtacgtcaacgcaatgaacgacaagatccgc
aaggccatcaatatcaacaccccttttgtcttcaagcacactagcaacctcaagagcatg
gatcacttcgatgacatcggccccagcgtggtgatggcgtctccgggtatgatgcagagc
gggctctccagagagctgtttgagagctggtgcacagacaagaggaacggagtcatcatc
gctggatactgtgtagagggcacactggccaagcacatcatgtctgagcccgaggagatc
accaccatgtcggggcagaagctgcagctgaagatgtcggtggactacatctctttctcc
gcccacactgactaccagcagaccagcgagttcatcagggccctcaaaccaccacatgtg
atcctggtccacagggagcagaatgagatggcccgtctgaaggctgccctgatcagggag
tacgaggacaatgaccaggttcacatcgaagtccacaaccctcgaaacacagaagctgtc
accctcaacttcagaggagagaagctggccaaggtgatgggctccctggctgatgaaaag
tgtgttcaaggccagagagtgtcgggcatactggtgaaaaagaacttcaactaccacatc
ctcaatccctcagacctctccacatacacagagctggccatgggaacagtgaaacagacc
caggccatccccttcactgggccctactcactgctcgtctgccacctgaggagcctcact
ggtgaagtggaagagcttgatggaatggagaagcacactctgtagatttttttaaatatc
actctgatccacgaggccggcatggtgctgctggagtggctagcaaaccctctcaacgac
gtgtatgctgacgccgtcaccactgtagtgctggaagtccagtccaaccccaaggctcag
aaagcgatggagacccagagtgccatactggacatggaggttttccagaacagactagga
gtcatgttgcaggacatgtttggattagattgtgtggatttcagtgatggtaaaaacgtc
tcgntagatgggaagacggttcacatcttcttggaaacgaggtcggtgtgctacgaggat
gaaagcaccgacgacgactccctgagagagatggtggagctgtcagtgcagcggctctac
gacgccctgaacccagtcatctga
DBGET
integrated database retrieval system
