Pseudochaenichthys georgianus (South Georgia icefish): 117467613
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Entry
117467613 CDS
T09629
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03013
Nucleocytoplasmic transport
pgeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117467613 (pnn)
03015 mRNA surveillance pathway
117467613 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117467613 (pnn)
03041 Spliceosome [BR:
pgeo03041
]
117467613 (pnn)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117467613 (pnn)
Spliceosome [BR:
pgeo03041
]
Complex C
Other components
EJC/TREX
117467613 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
117467613
NCBI-ProteinID:
XP_033967241
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Position
22:29716937..29745954
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AA seq
669 aa
AA seq
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MAVVVRSLQDQLEKAKQSLKSVDDNIRKLTGRDPNESRPGQIRRMSGPMAGPGGGGRGRG
MNLLRRSLSDMGSSAPPAKQRDIEGALLRLAGDQRARRDTRHDSDAEDDDDVKKPALQSS
VVATSKERTRRDLIQDQTIDERGKQRNRRMFGLLMGTLQKFKQESNVSTDKLKRRTEIEQ
KLEVQAETEKKKVETDKRELFEERRAKQTELRLLEQKVELAQLQEEWTSHNNHLVKYIRT
KTKPNIFYAPRKMCSATQKLLDESTKKLNAVFDERREAFAEHLSKMESRPRRQPNRDQDC
NTAATGTDRPAEGKPAGQVVKVTGNRGDAEIEEDEEEDEEMEEREKEGAKKEIIMEEGEK
EVLQKVEEEVEGMELSEEVRKVDEEEKEGEGVVKAVEEKEEKEPSPGSEEGEGEGEKQKE
DRTMVDEGDAEKNLPEIPIEKPQETPSSEPSAPSQAADSGPQSPPILPVGELAEKPSEIP
EPQEASEAPEQEVSPPGLMLQNSAAESHAAEGKPEEAPQKPAVSQEAPAITPSPAKKGEE
GGRGRKKAKEAKKSRNASSSSSGSSSSGSSSSSSGSSHSSSSSSSSSASSKSRSRSRDPS
KRKRRPSERARDRKKGEERSQRKRGGSSGGGRDSKASKEKKKRRSDEGRSRSSRGDREHK
DRDRKDKRR
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggtagtgcggagcttgcaagaccagctcgaaaaagcaaaacaaagcctgaaa
agtgtggacgataatattcgtaaattaactggacgtgaccctaatgaatcaagaccgggt
cagatccgtcggatgagcggccccatggcaggccccggtggaggaggtagaggcagaggg
atgaacctgctcaggcgtagtctctcagacatgggaagcagcgccccccccgccaagcaa
agagacatcgaaggagccctgctcaggttggcgggggaccagagggccaggagagacacg
cgccacgacagcgacgccgaggatgatgacgatgtcaaaaagccggcgttgcagtcgtct
gttgtagctacctccaaggagagaacacgccgagacctcatccaagatcagacaatcgat
gagaggggcaaacagaggaatcggcgtatgttcggcctactcatggggaccctgcaaaaa
ttcaaacaggagtcaaacgtctcaacagataagctaaagcggcgcacagagatcgagcag
aagctcgaggttcaggcagagactgagaaaaagaaggtggagactgacaagagggagctc
ttcgaggagaggagagccaaacagactgagctgagactgctggagcagaaagtggaatta
gctcagctgcaagaggagtggaccagccacaacaaccatctggtgaaatacatccgcacc
aagaccaagcctaacatcttttatgcgcctaggaaaatgtgctccgccacacagaaactc
ctcgacgagtccaccaagaaactcaatgctgtgtttgatgagaggcgcgaggcttttgca
gagcacctcagtaagatggagtcccgcccccggcgacagccaaaccgcgaccaggactgc
aacaccgcggcaacgggaacggaccgcccggcggagggtaagccagcaggtcaggtagtc
aaggtgacaggtaacaggggagatgcagagatagaggaagacgaggaggaggatgaggag
atggaggagagggaaaaggaaggggctaaaaaggagattattatggaggagggggagaag
gaagtgttgcagaaggttgaggaagaggtagaggggatggagttgagtgaggaggttagg
aaagtggatgaggaggagaaggaaggagagggggtggttaaagctgtagaggagaaggaa
gagaaggagccaagcccagggtcagaggagggggagggggagggcgagaaacagaaagag
gacaggactatggtagacgagggggatgcagagaagaatctcccagagataccgattgaa
aagccccaggagaccccgtcctccgaaccaagcgcacccagccaagcagcagacagcggg
ccccagtccccccccatcctccctgtgggggagctagcagaaaagccctccgagatccca
gaaccccaagaagcctccgaggctcccgaacaggaagtgagcccgcctggcctcatgctg
cagaactcagcagctgagagccacgctgcggaggggaaaccggaggaggctccccaaaaa
ccagccgtgtcccaggaggcccccgccatcaccccctcacccgcaaagaagggagaggag
ggcgggagaggcaggaagaaggcaaaggaggcaaagaagagccgcaacgcctcctcttcg
tcctcgggctcctcctccagcgggagctcgtcctcttcctccgggtccagccactcctcg
tcttcctcctcttcttcgtccgcgtcgtcaaagagccgcagtcgcagccgagaccccagc
aagcgcaagaggaggccgtcggagagggcgagggacaggaagaaaggggaggagaggagt
cagcgcaagagaggggggagcagcggaggagggagggactcaaaggcgtccaaggagaag
aagaagaggaggagcgatgaagggaggagcaggtcctcccgtggcgatagggagcataaa
gatagagacaggaaggacaagagacgctaa
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