Pseudochaenichthys georgianus (South Georgia icefish): 117467794
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Entry
117467794 CDS
T09629
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117467794 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgeo03041
]
117467794 (dhx38)
Enzymes [BR:
pgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117467794 (dhx38)
Spliceosome [BR:
pgeo03041
]
Complex C
Other components
Step II factors
117467794 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_16
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
117467794
NCBI-ProteinID:
XP_033967553
LinkDB
All DBs
Position
3:36777799..36796252
Genome browser
AA seq
1257 aa
AA seq
DB search
MDDDVSMHRLEGSDPDDQVGGLIVKKKSAAEEAHVFRAPTPRTSLLGLDLLAAQKRKERE
SKEQADAIADERNSKKSKVTSYKDWEEGKSDSGSDEEEEEEDDKDSGVKNKESRKYRVTG
SETPSNPGGVSEEFKRRHQQREKDRREHGVYTTSNEDKNREREKERSRDKGRDRRSERGE
REGSRGSSSGRSERGDRSERSQREGWSDRISRGSKREEPSSPQNRPRDSFTPSRSNWEED
DSGYSSSRHSQWESPSPAPSNREMERSERSHRSLRESERRDRSVRGRYPDDTPLPTPSYK
YNEWANDRKHLGSTPRLSQGKGRKEDGQGGIMFDNEDEKDQWVEDQKQADRDWYMMDEGY
DEFHNPFTTTSEEYVKKREQILQKQTQKRISAHRRQINEDNERWETNRMLTSGVVQRLEV
DDDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDPTSDMAIIARKGSQLVRK
HREQKERKKAQHKHWELAGTKLGDIMGVKKTEEADRSGGKAVGEDGKVDYRAEQKFADHM
RDKSEASSDFAKKKTLLQQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQYL
HEDGYTSYGMVGCTQPRRVAAMSVAKRVSEEIGTNLGEEVGYAIRFEDCTSEKTLIKYMT
DGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLRDVVSRRTDLKLIVTSATMDS
DKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQGLQIHLSGLIGDILIFMPG
QEDIEVTSDQIVERLEDLENAPALTVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAE
TSLTVDGIMFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQCYRLY
TQSAYKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWI
LGALDNTGSLTPTGRLMVEFPLDPALSKMLIVSCDMACSADILIIVSMLSVPAIFYRPKG
REEESDQVREKFSVPESDHLTYLNVYMQWKNNNYSSNWCNDHFIHTKAMRKVREVRSQLK
DIMVQQRMNLISCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFG
MGYTPDYIIYHELVMTTKEYMQCVTSVDGEWLAELGPMFYSVKQAGKSRTENRRRAKEDI
INMEEEMSMAEEQLQARREEQDKKTNTGTVKVVKICTPGRKDEAPMTPRRTPARFGL
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgatgtgtccatgcacaggctggaagggtctgatcccgatgatcaagttgga
ggactgatcgtaaagaagaagagtgctgctgaagaggcccatgtttttcgggctcccact
ccacgcacgtccctgctgggcttggatctgctagcagctcagaaaaggaaggagcgagag
agtaaagaacaagcagacgctattgcagatgaacgaaatagcaagaagtcaaaggttacc
tcctacaaggactgggaggaaggtaaaagtgactctgggtctgatgaagaagaagaagaa
gaagatgataaggacagtggtgttaaaaacaaagagagcaggaagtatcgtgttactggc
tcggagacgccctcaaatcccggaggggtcagcgaggagttcaaacgcagacaccagcag
cgagagaaagacagacgtgagcacggggtctacaccacctccaacgaggacaagaacaga
gaaagggaaaaagaaaggagccgagataaggggagagaccgaaggagtgaaagaggagag
cgagagggcagccgcggcagcagcagcggccggtcggagcgcggtgatcggagcgagcgc
tcacagagggagggctggtctgatcgcatcagccgggggagtaagagagaagagccgtca
tcgccacagaatcgccccagagattccttcacaccctcaagatcgaactgggaggaggat
gatagcggttattccagttcacggcattcccagtgggagtctccatcccccgccccgtct
aacagagagatggagcgctcagagagaagccatcgctccctccgagagagtgagaggaga
gacaggtcagtcagaggccggtaccctgacgacacacccctgcctaccccatcatacaag
tataacgagtgggcgaatgacaggaaacatttgggatctacacctcgtttatcacaagga
aaaggcaggaaagaagatgggcagggaggaattatgtttgataatgaagatgagaaagac
cagtgggtggaggaccagaagcaagctgacagagattggtacatgatggatgaaggatat
gatgagttccacaaccctttcactaccacctctgaagaatatgtaaagaagagagagcag
attcttcagaagcagactcaaaaaaggatatctgcccataggcggcagatcaacgaggat
aatgagcggtgggagactaaccgtatgctgaccagtggtgtggtgcagaggttggaggtg
gatgacgacttcgaggaggacaatgctgccaaggttcatctgctggtccacaacctggtt
cctccttttctggatggaagaatagtattcactaagcagccagagcctgtcatccctgtg
aaagatccaacatctgacatggccatcatcgctcgtaaaggcagccagctcgttcggaaa
catcgtgagcagaaagaacgcaaaaaggcacagcacaaacattgggaattggcaggcacc
aagttgggggacatcatgggagtcaagaagacagaggaggcagaccgctccgggggcaaa
gcggtgggcgaggacggcaaagtagactacagagcagagcagaaatttgcagaccacatg
agagacaagagcgaggccagcagtgactttgctaagaagaagacccttctgcaacagaga
cagtatcttcccatcttcgcggtcagacagcagcttcttaacatcataagggacaacagc
attgtgattgttgttggggagacgggcagcgggaagaccacccagctgacccagtacctg
catgaggacgggtacaccagctacggcatggtgggttgtactcagcccagaagagtggcg
gccatgagtgtggccaagagagtcagcgaggagataggaaccaacctgggagaggaggtg
ggctacgcaatccgttttgaggactgcacatcggagaaaacattaataaagtacatgacg
gacggtatcctgctcagggagtcactgagggagtcggacctggaccactacagtgccgtg
atcatggacgaggctcacgagcgctccctgaatactgacgtgctgttcggcctgctgcgt
gatgttgtatctcggcggactgatttgaaactcatagtcacctctgctaccatggactca
gacaagttcgctgcattttttggcaacgtacccattttccacattccaggaagaacattt
cccgtagacatcttatttagcaagactcctcaggaggactacgtggaggcagcagtgaag
caggggctgcagatccacctcagcgggctgataggagacatcctcatcttcatgcccggg
caggaggatatcgaggtgacctcagatcagatcgtggagcggttggaggacttggagaac
gctccggctctgaccgtgctgcccatctactcccagctgccctccgacctccaggccaag
atcttccagaaggctccagatggtgtgaggaaatgcatcgtcgctacaaacatcgctgag
acctccctcaccgtggatggaatcatgtttgtcgtggatgcaggatactgcaaacttaag
gttttcaaccctcgcattggaatggatgctctacaggtctatcccatcagccaggctaat
gctaaccagcgctcaggcagagcaggacgtacaggaccagggcagtgttacaggctctac
actcagagcgcctacaagaacgagatgctgaccaccaccataccagagatccagaggacc
aacctggccaacgtggttctgctgttaaagtctctgggtgttcaggatctgctgctcttc
cacttcatggacccccccccagaggacaacatgctcaactccatgtaccagctctggatc
ttgggagctctggacaacacaggctctttgacaccgacggggcgtctgatggtggagttt
cccctcgaccccgccctgtccaagatgctgatcgtgtcctgcgacatggcctgcagtgcg
gacatcctcatcatcgtctccatgctgtctgtgcccgccatcttctacagacctaagggt
cgtgaggaggagagtgaccaggtgagggagaagttctctgtcccagagagcgaccacctc
acatacctcaacgtctacatgcagtggaagaacaacaattactccagcaactggtgcaac
gaccacttcatccacaccaaggccatgcgcaaggtacgagaggtgcgctcccagttaaag
gacatcatggtgcagcagaggatgaacttaatttcctgcgggtcagactgggacatcatc
agaaagtgcatctgtgcagcgtacttccaccaggctgccaaactcaagggcattggggaa
tatgtgaacgtgaggacaggcatgccatgtcacctgcatcccaccagctccctctttggt
atgggctacacccccgactacatcatctaccacgagctcgtcatgaccaccaaggagtac
atgcagtgtgtgacttcagtggatggagagtggctggcagaacttgggcccatgttttac
agcgtcaaacaggcgggaaaaagcagaacggagaaccgtcggcgggccaaggaggacatc
atcaacatggaggaggagatgtccatggctgaggagcagctgcaggcgcggagagaggag
caggacaagaagaccaacactggcactgttaaggttgtaaagatttgcacaccaggaaga
aaagacgaagcccccatgacgcccagacgcactcctgcccgatttggactgtag
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integrated database retrieval system
