KEGG   Pseudochaenichthys georgianus (South Georgia icefish): 117468094
Entry
117468094         CDS       T09629                                 
Symbol
hltf
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
Brite
KEGG Orthology (KO) [BR:pgeo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pgeo04121]
    117468094 (hltf)
   03400 DNA repair and recombination proteins [BR:pgeo03400]
    117468094 (hltf)
Enzymes [BR:pgeo01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117468094 (hltf)
Ubiquitin system [BR:pgeo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    117468094 (hltf)
DNA repair and recombination proteins [BR:pgeo03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    117468094 (hltf)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_3 zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX zf-RING_2 zf-RING_5 DEAD RING_XB3-XBAT31 Prok-RING_4 zf-C3HC4_4 zf-ANAPC11 ResIII zf-rbx1 zf-Nse zf-RING_6 zf-RING_4 Urease_linker HDA2-3 DUF5817
Other DBs
NCBI-GeneID: 117468094
NCBI-ProteinID: XP_033967963
LinkDB
Position
22:2744842..2770019
AA seq 966 aa
MFSRRWGFGWDSYSEVDLFTERYDSSAETLSQAIRAAASEEPDADGSVPFGHLQGTVVGL
RFYTGVVNQGEMVGLVRQPQNPYDRNAVMVSNIYGNQVGHIKRELAAAMAHVMDNNLAKV
EGVVHSGTKNSFTMPVMLSFWGQEENKNAVMENMSRRGFKLNSGASKATGGSQNSYTQGQ
GARAYSSKKGLTTALSAEELKNAFDNLFDGLMESKDGEKQAAESVGTPLMPHQKVALSWM
CARENKSTLPPFWEKRGELYYNTLTCFSAKEIPEIIRGGILADDMGLGKTLTTIALILTN
FHKGKPLPVEICKERSSPFKAKTQPDMASKLEGSSAGDEAAGSLCSDLPQVEVIDSEEVV
VKSEKSTSKGKRKATKRQPSKVVCVEGAEAPVLLEDLGFAAALGGSAADSATKKKKTGKK
AAPTLSEESFIADSAEDLSARPTLIICPLSVISNWLDQFEQHVRADVKLNVYLYYGPERN
RNKNFLSSQDVVITTYNVLSADFGNKSPLHAINWLRVVLDEGHVVRNPNAQISKAVLDLT
AQRRWILSGTPIQNSVKDLWMLLAFLRLKPFDAKEWWNRVIQRPVTQGDRAGLQNLQTLV
KCITLRRTKSSEKDGRPLVSLPEKTVSVEQVELSQTEREEYELARNEGRNTIGRYVAEGT
VLRNYADVLAILMRLRQHCCHPDLLAKTSSDLGAAATPAELRERLIEKLRSVLASGSDEE
CSVCLESVRLPVITHCAHVYCRPCIAQVISSEQENARCPLCRTEIKANELVEFPQEKMEE
EKCANPDKWRTSSKVQALMGNLLRLRCEDSSIKCLVISQFTRFLTILETPLREQGFSFVR
LDGSMSQKKRTQVIQEFQSSAADGPSIMLLSLKAGGVGLNLTAASHVFLMDPAWNPATEE
QCIDRCHRLGQTRRVVVTKFLVKDSVEETMVKIQKQKQELVDKAFGSTNTDKKTSRIDDI
KALMEL
NT seq 2901 nt   +upstreamnt  +downstreamnt
atgttctctcgcaggtgggggttcggctgggacagttacagtgaggtggacctcttcaca
gagcgctatgactccagtgcagagacgctctcgcaggccatcagagccgctgcgtcggag
gagccggacgcagacggcagcgtgccgttcggccacctgcagggcactgtggtcggcctc
agattctatacaggggtggtgaatcaaggggaaatggtcggtttggtgcgacagccccag
aatccatacgaccgcaatgcagtgatggtttccaacatttatggcaaccaagtgggccac
attaagcgggagctggcggcagcaatggctcacgttatggacaacaatttggcgaaagta
gagggcgtggtgcattcagggaccaaaaactccttcaccatgccagtgatgctgtccttc
tggggccaagaagaaaataaaaatgctgtgatggagaacatgtcacgccgcgggtttaaa
ctaaactcgggtgcaagcaaagcaacaggtggaagtcagaactcatatactcaagggcag
ggtgctcgtgcgtactcatctaagaaaggattgaccaccgctctgtctgcagaggagctg
aagaatgcatttgacaacctttttgatggtttgatggagagtaaagacggagagaaacaa
gcagcagagtctgtaggtactcccctcatgcctcaccagaaggtggcgctgtcctggatg
tgcgctcgagaaaacaaatctaccctgcctccgttttgggagaagagaggcgagctgtac
tacaacactctcacgtgcttctctgccaaagaaataccagagatcattcgggggggaata
ttggcagatgacatgggactggggaaaactctgacaaccattgctctgatcctcaccaac
ttccacaaaggaaagcctctgcctgtggagatatgtaaagagcggtcttcacctttcaaa
gccaaaactcaaccagacatggcctccaaactggaagggagcagcgcaggcgatgaagca
gctggttctctttgctcagaccttcctcaggtggaggtgattgattcggaagaggttgtt
gtcaagtcagaaaaaagtacgagcaaagggaagaggaaagccaccaagcggcagcccagt
aaagttgtttgtgttgaaggtgcagaggccccagtgctgctggaggatctgggctttgct
gcagcgctgggtggctccgcagcagattctgccacaaagaagaagaaaaccggcaagaaa
gccgctcccacactgagtgaggaatccttcatcgccgacagtgcagaggacctatcggct
cgcccgactctcatcatctgcccgctctctgtcatcagcaactggctggaccagtttgag
cagcatgtgcgtgctgacgtgaagctaaacgtgtatctgtattacgggccggagcgcaac
aggaacaagaactttctgtcctctcaggatgtcgtgatcacaacctacaacgtcctctct
gctgactttgggaataagagtcccctgcatgcgatcaattggctgagggttgtcctggat
gaaggacatgtcgtcagaaaccctaatgcacagataagcaaggctgtgctcgacctcaca
gctcagcggcgctggattctgtcaggtactcctatccagaacagtgtgaaggacctgtgg
atgctgctggccttcctgcgcctgaaacccttcgatgcgaaagagtggtggaacagagtg
atccagagacccgtcactcagggggaccgagccggcctgcagaacctccagaccctggtg
aagtgcatcaccctgaggcgcacaaagagcagtgagaaggacgggcgccccctggtgtct
ctgcccgagaagacggtgagcgtggagcaggtggagctgagccagaccgagagagaggag
tacgagctggcacgcaacgagggacgaaacaccatcggcaggtacgtagctgaagggaca
gtcctgaggaattatgccgatgtgttggccatcctgatgaggcttcgtcagcactgctgc
caccctgatctgctggcaaaaacatcctcagacctgggtgctgcagcgacgcctgcagag
ctgcgggagcgtctcatagagaagctgcgctcggtgttggccagcggctccgatgaggag
tgctcagtgtgtctggagtctgtgcgtctgcccgtcatcacacactgcgcccacgtctac
tgccggccctgcatcgcccaggtcatcagcagcgagcaggagaacgcgcgctgtcctctc
tgtcggactgagatcaaggccaatgagctggtggagtttccacaagagaaaatggaggaa
gagaaatgtgcaaaccctgacaagtggaggacgagctcgaaggtgcaggcgctgatggga
aacctgctcaggcttcgatgtgaagacagcagcatcaagtgtttggtcatctctcagttc
acacgcttcctcaccatactggagaccccactcagagagcaaggtttcagttttgtgcgt
ttggacggcagcatgagtcaaaagaagaggactcaggtgatccaggagtttcagagctct
gcagccgacggcccctccatcatgctgctgtcactcaaagctgggggggtggggcttaac
ctgacggccgcctctcatgtgttcctcatggaccccgcgtggaaccctgcgaccgaggag
cagtgcatcgaccgctgccaccgcctgggacagaccaggagagtggtcgtcaccaagttc
cttgtgaaggactcagtggaggagaccatggtgaagatccagaagcagaagcaggagctg
gtggacaaggcgtttggctccacgaacactgacaagaaaacgtctcgcattgatgacatc
aaagctctgatggagctgtag

DBGET integrated database retrieval system