Pseudochaenichthys georgianus (South Georgia icefish): 117468363
Help
Entry
117468363 CDS
T09629
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo03015
mRNA surveillance pathway
pgeo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117468363 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
117468363 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgeo03019
]
117468363 (cpsf6)
Messenger RNA biogenesis [BR:
pgeo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
117468363 (cpsf6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
117468363
NCBI-ProteinID:
XP_033968326
LinkDB
All DBs
Position
23:complement(6538986..6555265)
Genome browser
AA seq
602 aa
AA seq
DB search
MADGVDHIDIYADVEEEFNQEADYPVHDQIDLYDDVISPSANNGDAPEDRDYLDTLSTQG
GSEGGKSSQPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAIRSVGITDVLEIKFFENRAN
GQSKGFALVCVGSESSSRKLMELLSKRELHGQNPIVTPCNKQSLSQFEMQSRKTLSPHFQ
GAQSGQMSGEGKAGPPSGGLRGGGFPMGRGRGRFPGPPGPGGDRFPCPPGPGGPPPHFPG
SGMRPDLIRHQDGPLMDMSFNPFPPGGRNGNWRGRGGMQGPPRPPPGPLGPPGPLGPPPP
GQGLPLLHPGPPNRGDRLPPPVLFPGQFGQPPMGPLPPGPPPPGYGPPPGPPPPQQGPPP
PGPFPLRPPGPLGPPMSLAPPPHMPGPPPGGPPPAPHVNPAFFPPPGNNNNMPPNDNRGP
PGPNDPYGRPPPYDRGDYGPGGREMEVSRTPLSEAEFEEIMNRNRAISSSAISRAVSDAS
AADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSASSPMMLLNA
RRERSRERDHSRSREKSRRHKSRSRDRHEDYYRERSRERDRHRERDRDRDREREREREYR
HR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggatcacatcgatatctacgccgacgtagaggaggaattcaaccag
gaagccgactacccggtccacgaccagatcgatctatatgatgatgtaatatctccatca
gccaacaatggagatgctccggaggaccgcgactatctggatacactctctacacagggt
ggctcagagggagggaagagttcccaacccaacgtggtgtacacctacacaggcaaaagg
attgccctgtacataggaaacctaacatggtggacgactgacgaggacctgaccgaagct
atccggtcggtcggcatcacagatgtgctggagatcaagttctttgaaaacagagccaat
ggccagtcaaaagggtttgcactggtgtgtgtgggctcagagtcatcttccaggaagttg
atggagctgctgtcaaagagggagctccatggtcagaatcccatcgtcacgccgtgcaac
aaacagtccctcagccagtttgagatgcagtcacgcaaaacgttatcccctcatttccaa
ggtgcccagtcaggccagatgtccggggaaggcaaagccggcccccctagcggtggcctt
cgtggagggggtttccccatgggtcgcggcagaggcagattccccggaccacccggccct
ggaggcgaccgcttcccttgtccacccggacccggaggaccacctccacatttccctggc
tcgggaatgagaccagatctgattaggcaccaagatggccctctgatggatatgagtttc
aatcccttcccgccggggggcaggaacgggaactggcgtggcagaggtgggatgcaaggt
ccaccacgtccccctcctggtccactcggaccccctggtcccctaggacctccacctcct
ggccagggtctcccccttctccaccctggtcctccaaatcgtggtgacaggcttcctccc
cctgttctcttccctggtcagtttggccagcctcccatgggccccctgcccccaggcccc
ccacctccaggttacggtcctcctcctggtcccccaccgcctcaacagggtccacctccc
ccgggacccttccctctgcgccccccaggcccccttgggccccccatgtctttggctcca
cctccacacatgccaggtcctccaccaggtggaccaccaccagcaccccatgtcaaccct
gcattcttcccccctcctggcaacaacaacaacatgccccccaacgacaaccgaggcccc
cccggaccaaacgacccatacggacgcccgccaccatatgacagaggggactacggtcct
ggaggccgggagatggaggtgtcccggaccccactgagcgaggcagagtttgaggagatc
atgaacaggaacagagccatctcctccagcgcaatttctcgagcagtgtctgacgccagt
gcagctgactatggcagtgccatagagaccttggtgacagccatcagtctgattaaacag
tccaaagtgtcggcggacgaccgctgtaaggtcctgatcagttctctgcaggactgtctc
cacggcattgagtcaaaaagctacggttctgcctctagtccaatgatgcttctcaatgcc
aggcgagaacggtccagggaacgggaccatagccgctccagagaaaagagccggcgtcac
aagtctcgcagccgtgataggcatgaagactattacagagaacgcagccgggagcgcgac
cgccatcgtgagcgggacagggaccgagaccgcgagagagagcgcgaaagggagtaccga
caccgctag
DBGET
integrated database retrieval system
