Pseudomonas germanica: J0G10_03780
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Entry
J0G10_03780 CDS
T08191
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pgf
Pseudomonas germanica
Pathway
pgf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J0G10_03780 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgf03019
]
J0G10_03780 (rnr)
03016 Transfer RNA biogenesis [BR:
pgf03016
]
J0G10_03780 (rnr)
Enzymes [BR:
pgf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
J0G10_03780 (rnr)
Messenger RNA biogenesis [BR:
pgf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J0G10_03780 (rnr)
Transfer RNA biogenesis [BR:
pgf03016
]
Prokaryotic type
tRNA degradation factors
J0G10_03780 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
TRAM_2
TRAM
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
QYY82588
LinkDB
All DBs
Position
873426..876056
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AA seq
876 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPAAREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHETIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAQIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKSGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKITEARQLRGEYNDVLP
HLKQLYALYKVLLAARHVRGAIDFETQETRIIFGTERKIAEIRPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA
SIKDRPDFHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQDTPHVRRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKKRGAETAAPAAKASEEKAPAK
SASRRPAKEKAAEAYRPSDAVAKNAELRKSREMKKALLSDAKNGGKAASGGKTGRSAPEK
ASGGKPAKPSKHRKGPPKAGSAPAKSGGARKPKAKS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatcctggcgcacctcgccgatcggggttcgcctgctgcc
cgcgagcaactggtcgaagagtttggtctgaccacagaagaccagatcgaagccctgcgc
cgccgccttcgcgccatggagcgcgacgcccaactgatctacacccgccgtggcacttac
gcgccggtcgacaagctcgacctgatcctcggccgcatcagcggtcaccgtgacggtttt
ggcttcctggtgccggatgacggcagcgacgacctgttcatgagccccgcgcaaatgcgt
ctggtgttcgatggcgaccgtgcgctggcgcgtgtgtccggtctcgaccgtcgcggtcgc
cgtgaaggcgtgatcgttgaagtggtgtcccgtgctcacgaaaccatcgtcggccgctac
ttcgaagagggcggcatcggcttcgtcgtcgcggacaacccgaagatccagcaggaagtg
ctggtcaccccgggccgcaacgccaacgcgcagatcggtcagttcgtcgaggtgaaaatc
acccactggccgacgccgcgcttccagccgcaaggcgatgtggtcgaagtggtcggcaac
tacatggcgccgggcatggaaatcgatgtcgccctgcgcacctacgacattccgcacgtc
tggcccgaagccgttctgaaagaagcggccaagctcaagccggaagttgaagaaaaagac
aaagagaagcgcgtcgacctgcgccatctgccgttcgtcaccatcgacggcgaagacgcc
cgcgacttcgacgatgcggtttattgcgaagccaagccgggcaagctgcgcctgttctcc
ggcggctggaagttgtacgtggcgattgctgacgtttccagctacgtgaagatcggctcg
gcgctggacaacgaagcccaggtacgcggcaactcggtgtacttccctgagcgcgtggtg
ccaatgctgcctgagcaactgtccaacggcctgtgctcgctgaatccgcatgttgatcgt
ctggccatggtttgcgagatgaccatctccaagtccggcgaaatgaccgactactgcttc
tatgaagcggtgatccattcccacgcgcgtctgacctacaacaaagtcagtgcgatgctg
gaaacaccgaaaatcaccgaagcgcgtcagcttcgcggtgagtacaacgacgttctgccg
cacctcaaacagctttatgcgctgtacaaggtgctgctggctgctcgtcacgtacgtggc
gcgatcgatttcgaaacgcaggaaacccgaatcatcttcggtaccgagcgcaagattgcc
gaaatccgtccgaccacccgtaacgacgcgcacaagctgatcgaggaatgcatgctggcg
gccaacgtggccaccgccgaattcctcaagaagcacgaaattcctgcgctgtaccgcgtc
cacgatggtccgccaccggagcgtctggaaaaactccgtgccttccttggcgaactcggc
ctgtccctgcacaaaggcaaggacggtccgtcgccgaaggattatcaggcgttgctggca
agcatcaaggatcgtccggatttccacctgatccagaccgtgatgctgcgctcgctgagt
caggcggtgtacagcgctgataatcagggccacttcggcctgaattatgaagcctatacc
cacttcacttcgccgatccgtcgttacccggacctgctgacgcaccgcgcgatccgcagc
gtgatccattcgaaacaggacactccgcacgttcgccgtgccggggcgatgaccattccg
aaggcgcgcatctatccgtacgacgaggcggcgctggagcagctcggcgagcagtgctcg
atgagcgagcgccgtgccgatgaagccacccgcgatgtggtgaactggctcaagtgcgag
ttcatgaaagaccgcgtgggcgagtcgttcccgggtgtgatcacagcggtcaccggtttt
ggcctgttcgttgagctgaccgatatctacgtcgaaggtctggtccacgtcacggcgctg
ccgggcgattactaccacttcgatcctgtgcatcaccgcctggcgggcgagcgcaccggt
cgcagcttccgtcttggcgataccgttgaagtgcgcgtgatgcgcgttgacctcgacgag
cgcaagattgacttcgagatggctgaaaaaaccatcagcgcgccgatcggtcgcaaaaag
cgtggtgctgaaaccgctgcgcctgctgccaaggcttcggaagaaaaggctccggctaaa
tccgccagccgtcgtccggccaaggaaaaagcggcagaagcctatcgcccaagcgacgcc
gtggcgaaaaacgccgagctgcgcaaaagccgtgaaatgaagaaggctctgctttccgac
gctaaaaacggtggtaaagcggcgtccgggggaaagaccggacggtcggcgcctgaaaag
gcctccggcggcaagccagcgaaaccgagcaaacaccgtaaggggccgccaaaagcgggc
tccgctccagccaaaagtggcggggcacgtaaaccgaaggcgaagtcatga
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