Pseudomonas germanica: J0G10_08220
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Entry
J0G10_08220 CDS
T08191
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pgf
Pseudomonas germanica
Brite
KEGG Orthology (KO) [BR:
pgf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pgf03016
]
J0G10_08220 (rnd)
Enzymes [BR:
pgf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
J0G10_08220 (rnd)
Transfer RNA biogenesis [BR:
pgf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
J0G10_08220 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QYY83425
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All DBs
Position
1853396..1854529
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AA seq
377 aa
AA seq
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MAIDIHWIRDNESLAQFCAEWQQLPFVALDTEFMRVDTFYPIAGLLQVGDGKRAYLIDPL
TINAWQPLAALLENPAVLKVLHACSEDLEVLLRLTGSLPAPMFDTQLAAAYLNLGFSMGY
SRLVQEVLGIELPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVQLRPKLSDDKFAWV
LEDGAELVANLRRETDPYEVYREAKLAWKLSRAQLAVLRELCAWREKEARARDLPRNRIV
REHSLWPLARTQPDNLAALGKIEDMHPRTVRQDGQFLLDLIKRSGSVGPDQWPPAVAEPL
PIEAAALIKQLRALGQAEAERLGIAPELMLRKKTLEALVKSGYPEGPYQLPESLRGWRRE
LMGQKLLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacaacgaaagcctcgcgcagttttgcgccgag
tggcagcagctgccgttcgttgccctcgacaccgaattcatgcgggtcgacaccttctac
ccgattgccggcctgttgcaggtgggcgacggcaaacgcgcctacctgatcgatccgctg
accatcaatgcctggcaaccgctggctgcgttgctggaaaacccggcggtgctcaaggtc
ctgcacgcctgcagcgaagacctcgaagtgctgttgcgcctgaccggcagcctgccggcc
ccgatgttcgacacgcaactggccgccgcttacctgaacctcggtttctcgatgggctat
tcgcgactggtgcaagaagtgctcggcattgaactgccaaagggcgagacccgttccgac
tggttgcagcgtccgctgtccgagacgcaaatcagctacgccgccgaagatgccgtgcat
ctggcggaggttttcgtacagctgcggccgaaactgtctgacgacaaattcgcctgggtg
ctggaggacggcgctgaactggtcgccaacctgcgccgtgaaaccgacccgtacgaggtc
tatcgcgaggccaaactggcgtggaaactctcccgtgcgcaactggcggttctgcgtgaa
ctgtgcgcctggcgggaaaaggaagcccgcgcccgcgatctgccgcgcaaccgcatcgtc
cgcgagcattcgctgtggccactggcccgcacgcaaccggacaacctcgcggcgctgggc
aaaatcgaagacatgcacccgcgtaccgtgcgtcaggacggccaatttctgcttgatctg
atcaagcgctctggcagtgtggggcctgatcaatggccgcccgccgtagcggagcccttg
ccgatcgaagccgccgcgttgatcaaacaattgcgcgcattgggccaggctgaggccgag
cgtctgggcattgccccggaactgatgctgcgcaagaaaaccctcgaagccctggtcaaa
agtggctaccccgagggtccttaccaattgcctgagtcgttgcgtggctggcgccgcgaa
ctcatgggccagaagctgctcgacagcctggccaccgccggagaacagccttga
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