Pseudomonas germanica: J0G10_08465
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Entry
J0G10_08465 CDS
T08191
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pgf
Pseudomonas germanica
Brite
KEGG Orthology (KO) [BR:
pgf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pgf03009
]
J0G10_08465
Enzymes [BR:
pgf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J0G10_08465
Ribosome biogenesis [BR:
pgf03009
]
Prokaryotic type
rRNA helicases
J0G10_08465
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QYY83472
LinkDB
All DBs
Position
1902810..1904150
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AA seq
446 aa
AA seq
DB search
MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK
VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM
LFSATTGGSGLREMIGKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQHKEQIVNWLLAN
ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER
YLKQSFERRTIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKTAAKTPTKRKSVNR
PKPDSLVSSDGMAPLKRRKPAEPAAE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcacgaacgcctgcttaaagctgtggccgagctgaaattt
gtcgagccaacgcctgtgcaagccgcggccatcccgctggcgctccaagggcgtgatctg
cgggtgacggcgcaaaccggtagcggcaaaaccgccgctttcgttctgccaatcctcaat
cgcctgatcggcccggccaaggtccgcgtcagcatcaagacgctgatcctgctgccgacc
cgtgaactggctcagcagaccttgaaggaagttgaacgcttttcgcagttcactttcatc
aagtccggcctgatcactggcggtgaggacttcaaggtccaggccgcgatgctgcgcaaa
gtgccagacatcctcatcggtaccccgggccggatgatcgagcaactcaacgccggcaac
ctcgacctcaaagaagtcgaagtgctggtgctcgacgaagccgaccgcatgctcgacatg
ggcttcgccgaagacgtacagcgtctggtcgacgaatgtcctaaccgtcagcagaccatg
ctgttctccgccaccaccggcggttccggcctgcgcgagatgatcggcaaggtgctgaac
aaccctgagcacttgcagctcaatgcggtcagccaactgaactcgaccactcgccagcaa
atcatcaccgctgaccacaatcagcacaaagagcagattgtgaactggttgctggccaac
gagacctatcagaaggccatcgtcttcaccaacacccgcgccatggccgaccgtatctac
ggccgtctcgtggctcaggaatacaaagcgttcgtgctgcacggcgagaaagaccagaag
gatcgcaaactggcgatcgaccgtctgaagcagggcggcgtgaagattctggtcgctacc
gacgtcgcggcccgtggtctggacgttgatggcctggatctggtgatcaacttcgacatg
cctcgcagcggcgacgaatacgtgcaccgcatcggccgtactggccgtgccggcaacgac
ggtctggcgatctcgctgatctgccacggcgactggaacctgatgtcgagcatcgagcgc
tacctgaagcagagcttcgagcgccgcaccatcaaggaagtcaaaggcacctacggcgga
ccgaaaaaggtcaaggcctcgggcaaagccgttggtgtgaagaagaaaaagaccgacgcc
aagggcgacaagaagaaaacggccgccaagacgccgaccaagcgcaagagcgtcaaccgt
ccgaagccggactcgttggtgagcagcgatggcatggcaccgctcaagcgtcgcaagcca
gcagagcctgcggctgagtaa
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