Pseudomonas germanica: J0G10_08635
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Entry
J0G10_08635 CDS
T08191
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pgf
Pseudomonas germanica
Pathway
pgf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J0G10_08635 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgf03019
]
J0G10_08635 (recQ)
03400 DNA repair and recombination proteins [BR:
pgf03400
]
J0G10_08635 (recQ)
Enzymes [BR:
pgf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J0G10_08635 (recQ)
Messenger RNA biogenesis [BR:
pgf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J0G10_08635 (recQ)
DNA repair and recombination proteins [BR:
pgf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J0G10_08635 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
HTH_40
HTH_23
Sigma70_r4_2
GerE
Motif
Other DBs
NCBI-ProteinID:
QYY83505
LinkDB
All DBs
Position
1954347..1956476
Genome browser
AA seq
709 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRDGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQ
PRMLSFLQGLNIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFPDVPRIALTATADKRT
REEIVTRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLAERRSDAGIVYCLSRKK
VEEVAAFLSEQGFPALPYHAGLPNDLRAFNQKRFLNEEGLIMVATVAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPEPCGHCDNCVDGVQTWDATEPARQALSAIFRTG
QRYGVGHLVDVLLGKDNEKIRSFGHQHLSVWGVGKALSESEWRSLFRQLVARGLADVDHE
GYGGLRLNDSCRPLLKGEVTLELRRDLKPQVTAKTASKSPASQLVRGEEREQWEALRALR
RKLAEEHGVPPYVIFPDSTLLEMLRSQPTSLAEMARVSGVGARKLERYGDAFLEVLGGEA
EAPKAVADVRHELITLARAGMTPLQIAGQLQCSEKNVYTMLAEAIGKQQLSLEQALDLPE
ELMGEVQDAFLDGEGELPSVAEVAELFAGRVPEGVLYCVRAALQSEFEI
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgtcctcaaggacatcttcggctacgacagtttccgtggc
cgtcagggtgcaatcattgagcgcgtggccagtggcggtgatgcgctggtgctgatgcct
accggtggcggcaagtccctgtgctttcaggtgccggcgctgttgcgcgatggcctggcg
gtggtggtgtcgccgctgattgcgctgatggacgatcaggtcgccaccctcgaagagctc
ggtgtggccgccgccgcgctgaactccaccctgagcgctgaacagcagcgtgacctcgca
gcgcggatcaagcgcggcgaagtgaagatgttgtatctggcgcccgagcgtctggtgcag
ccgcgcatgctgtcgttcctgcaaggcttgaacattgcgttgttcgccattgacgaagcg
cactgcgtgtcgcaatggggtcacgatttccgtccggaatacctgcagctgggccagttg
gccgagatgtttcccgacgtaccgcgcatcgccctgaccgccaccgccgacaagcgtacc
cgcgaagaaatcgtcacgcgcctgcatctgcagaatgccgaacgcttcctgtcgagcttc
gaccgcccgaacatcttttaccgcatcgtgcccaaagagcagccacgcaagcagttgctg
gcgttcctcgctgagcggcgcagcgatgccggcattgtctattgcctgtcgcgcaagaaa
gtcgaggaagtcgcggcattcctcagcgagcagggcttcccggcgttgccgtatcacgct
ggtctgcccaatgatctgcgcgccttcaatcagaaacgcttcctcaacgaggaaggcttg
atcatggtcgctaccgtggcgttcggcatgggcatcgacaagcccaacgtgcgtttcgtc
gcccacctcgacttgccgaaatcccttgaggcgtattaccaggaaaccgggcgcggcggt
cgtgacggtctgccggcagatgcctggatggcctacggtctgcaagacgtggtgatgctc
aagcagatgctgcagaactccgaaggcgacgagcggcacaagcgtctggagcaacacaag
ctcgacgccatgctgtcgctttgtgaagagacccgctgccgtcgtcagaccctgctggcg
tacttcgatgaagacatgcccgagccgtgtggccattgcgacaactgtgtcgacggcgtg
cagacctgggacgccaccgagcctgcacgtcaggccttgtcggcgattttccgtaccggc
cagcgttatggcgtaggtcatctggttgatgtgctgttgggcaaggacaacgaaaaaatc
cgcagtttcggccatcagcatctgtcggtgtggggcgtcggcaaggcgttgagcgagagc
gagtggcgctcgctgttccgtcaattggtggcgcgcggtctggcggatgtcgatcacgaa
ggttatggcggtctgcgtttgaatgacagttgccggccattgctcaagggcgaggtcacg
ctggagctgcgccgcgacctcaaaccgcaggttacggccaaaaccgccagcaagagccca
gccagccaactggtgcgcggcgaagagcgcgaacagtgggaagccttgcgcgccctgcgg
cgcaagttggccgaagagcatggcgtgccgccgtacgttatcttccccgattccacgttg
ttggaaatgctccgcagccagccgacctcgctggcggaaatggcccgggtcagcggtgtc
ggcgcacgcaagctggagcgctacggtgatgccttcctcgaagtgctcggtggcgaggcc
gaggcgccaaaagcggtggccgatgtgcgccacgaattgatcaccctggcccgcgccggc
atgacgccgctgcagatcgccgggcagttgcagtgctcggaaaaaaatgtgtacacgatg
ctcgctgaggccattggcaagcagcagttgtcgctcgagcaagcgctggacttgccggaa
gagttgatgggcgaagtgcaggacgcgttccttgatggcgagggcgagttgccatcggtc
gctgaggttgcggagctgtttgccggacgtgtgccggaaggcgtgctttactgcgtgagg
gctgcgttgcagtcggaattcgagatctga
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