Pseudomonas germanica: J0G10_11765
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Entry
J0G10_11765 CDS
T08191
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pgf
Pseudomonas germanica
Brite
KEGG Orthology (KO) [BR:
pgf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pgf03016
]
J0G10_11765
Enzymes [BR:
pgf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J0G10_11765
Transfer RNA biogenesis [BR:
pgf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J0G10_11765
Prokaryotic type
tRNA splicing ligases
J0G10_11765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF1414
Motif
Other DBs
NCBI-ProteinID:
QYY84082
UniProt:
A0ABX8YXL2
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All DBs
Position
2631438..2632664
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AA seq
408 aa
AA seq
DB search
MKEHTYQLLEVANGKPIKLWTEGVPVENEAREQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLTAADLPDNLLGLRSAIEQAVPHGRSSNRS
RRDKGAWDEIPQQADQAWAGLQPRFKLITDKYPKLANTNNRGHLGTLGSGNHFIEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFIQMAQADMRQHIANLPDRDLAYFEEGSQHFDDYVEAV
GWAQDFAKQNRELMMRAVIQATRQIIRKPFEVALEAVNCHHNYVQKELHFGEEVLVTRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEESFSSCSHGAGRTMSRTKAKNMFTVEDQIRA
TAHVECRKDEAVIDEIPMAYKDIDKVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacacacttaccaactgctcgaagtcgccaacggcaaaccgatcaaactctgg
accgaaggcgtcccggtggaaaacgaggcccgcgagcagttgatgaacaccgcgaaaatg
ccgttcatcttcaaacatctggcggtcatgccggacgtgcacttgggcaagggctcgacc
atcggcagcgtgatcccgaccgtcggcgcgatcattccggcagcggttggcgtcgacatc
ggctgcggcatgatcgccgcgcgcacgtcgctgaccgccgctgatttgccggacaacctg
ctcggtctgcgcagcgccatcgagcaagccgtgccgcatggccgcagttcaaaccgttcg
cgacgcgacaagggcgcctgggatgaaatcccgcagcaagccgatcaggcctgggcgggg
ttgcagccacggttcaaattgattaccgacaagtacccgaaactggccaacaccaacaac
cgtgggcacctcggtacgctcggcagcggcaaccacttcatcgaagtgtgcctggacgaa
gccaaccgggtctggttcatgttgcacagtggctcgcgcggtgtcggcaacgccatcggc
aacctgttcatccagatggctcaggcggatatgcgtcagcacatcgccaacctgccggat
cgtgatctggcctacttcgaagagggcagtcagcactttgatgattacgtggaagcggtg
ggttgggcgcaggacttcgccaaacagaaccgcgagctgatgatgcgcgcggtgattcaa
gcgacacggcagattatccgcaagccgttcgaagtggcgctggaagcggtcaactgccac
cacaactacgtgcagaaagagctgcatttcggtgaagaggtactggtcacgcgcaaaggt
gcggtgtcggcgaagaagggcgagctggggattattccaggctcgatgggcgccaagagt
ttcattgtccgcggcctgggtaacgaagaatccttcagttcctgcagccacggcgccggc
cgcaccatgagtcggaccaaggccaagaatatgttcactgtcgaggatcagattcgcgcc
acggcccatgtggagtgccgcaaggacgaggcggtgatcgacgagattccgatggcctac
aaggacatcgacaaagtcatgcacgcccagcgtgagctggtggaagtgctgcacaccttg
cgtcaggtggtgtgcgtcaaaggataa
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