Pseudomonas germanica: J0G10_13410
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Entry
J0G10_13410 CDS
T08191
Name
(GenBank) Y4yA family PLP-dependent enzyme
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
pgf
Pseudomonas germanica
Pathway
pgf00300
Lysine biosynthesis
pgf00470
D-Amino acid metabolism
pgf01100
Metabolic pathways
pgf01110
Biosynthesis of secondary metabolites
pgf01120
Microbial metabolism in diverse environments
pgf01230
Biosynthesis of amino acids
Module
pgf_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pgf00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
J0G10_13410
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
J0G10_13410
Enzymes [BR:
pgf01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
J0G10_13410
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
QYY84394
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All DBs
Position
complement(2984959..2986353)
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AA seq
464 aa
AA seq
DB search
MPTTNKSAVEQPYKVHHPEMLTPLIDPVISTFINKFPNKLTDLVEQHGSPLNLVWPHAFE
LNTQALLNVLKQYLVPHAIFYGAKANKSQSMLGAAADSGIGVDVSSIHELNAALRAGVPG
TKICATGPAKTAVFHQALISAGSLICVDSLEEFDHLHSVIPTQPGPTKTRVLLRYRPKSS
QNSRFGMGSQDLLQCLQRLTEKPELFHFEGFHFHLGGYGFESRAQAFREASGFIEAAREM
GLNPQMIDIGGGLPIRYVEPETYAQFLQNDNNPSHYYNQKVPATYYPYGSELTATQWLTL
LLEAEHSQGLSIANYLQTQNITLALEPGRSLVDQAAMSVFRVTRSKQLADNKTVIFVEGS
SFSACETWFASEYLVDPILISTTHQPHPPIQAYIAGHSCLDDDVITHRLINFSTAPQAGD
LLIYINTAGYQMDLLENEFHRHPLPRRLTATCCTEGNYAFSPDY
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgcctacaacaaataaatctgctgttgagcagccgtataaagttcatcacccggagatg
ttaacgccgctgatcgacccggttatttccacgtttatcaacaagttcccgaacaaactt
acagacttggtggaacaacatggctcgccgttaaatctggtctggccccatgcgtttgaa
ttaaacacgcaagcgctgctgaacgtgttgaagcaatacctggttccccatgccattttc
tacggggccaaggccaacaagtcgcaaagcatgctcggcgctgcagcggattcggggatc
ggcgtcgatgtgtcgagcattcacgagttgaatgctgccctgcgcgcaggtgtgccgggc
accaaaatctgcgccacaggaccggccaaaacagccgttttccatcaagcgctgatcagc
gccggttcattgatttgtgtggattcgctagaggaattcgatcacctgcatagcgtgatc
cccacacaaccgggtccgacgaaaaccagagtgctactgcgttacagaccgaaaagcagt
cagaacagccgattcgggatgggctcgcaagacctgttgcaatgcctgcaacggttgaca
gaaaaacctgagctttttcattttgaaggtttccattttcacctcggcggctatggattc
gaatcccgcgcacaggccttccgtgaggccagcggatttatcgaggcggccagggaaatg
ggcttgaatccgcagatgatcgacatcggtggtggcttaccgattcgttatgtcgaacct
gagacctacgctcagttcctgcaaaatgacaataacccgagccactattacaaccagaaa
gttcccgccacttattatccttacggcagtgaactgaccgcgacacaatggctgacgtta
ttgctcgaagccgagcattcgcaaggtttgtcgattgccaattacttgcagactcagaat
ataacgctcgcactcgaacccggccgaagtctggtcgatcaagccgccatgtcagtattt
cgcgtcacgcgaagcaaacaattggctgacaataaaaccgtgatcttcgtggagggcagc
agtttcagcgcttgcgaaacctggtttgcctcggaatatctggtagatccgatacttatc
agcaccacacaccagccacaccccccgattcaagcttatatcgccggccatagttgcctg
gacgatgacgtcattacccatcgcctgatcaacttttcgacggcaccgcaagccggtgac
ttattgatttatatcaataccgctggttaccagatggacttgctggaaaacgagtttcat
cgccatcccttgccccggcggttgacggcgacctgttgtacggaaggtaactatgcattt
tcacctgactactaa
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