Pseudomonas germanica: J0G10_20785
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Entry
J0G10_20785 CDS
T08191
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pgf
Pseudomonas germanica
Pathway
pgf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J0G10_20785 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgf03400
]
J0G10_20785 (mfd)
Enzymes [BR:
pgf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J0G10_20785 (mfd)
DNA repair and recombination proteins [BR:
pgf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J0G10_20785 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QYY80162
LinkDB
All DBs
Position
4710207..4713656
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAEAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRSRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVESVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPAQALPNL
AIEAKATQPLAALSAFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KDRLAITIAPLDEGLMLDDPALALVAESPLFGQRVMQRRRREKRADGNNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQSTIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRITALKLQAEQLGIKKV
DGGPQGGRIEFAAQTPVDPMTLIKLIQSQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLLPKSV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgctactccctgccgaggcaggtaaacagcattggggcaat
ctgcccggtgctgccctcagcctggcgattgccgaggctgccagcgctgccaagcgcttc
accctgctactgaccgccgacagccagagtgctgaacgactggaacaggagctgagtttc
ttcgccccggatttgcccgttctgcatttccctgactgggaaaccctgccgtacgacctg
ttctcgccccaccaggacatcatttcccagcgcatcgccagcttatataggctgccggaa
ctggcgcatggcgtgctggtggtgccgatcaccacagcgttgcaccgtttggcgccgacc
aaattcctgctcggcagcagcctggtgctggatgtcgggcagaagctcgatgttgaacag
atgcgttcgcgactcgaagccagtggctatcgctacgtcgatacggtttatgagcacggc
gagttcaccgtgcgcggtgcgttgatcgacctgtttccgatgggcagcaagttgccgtat
cgcatcgacctgttcgatgacgaaatcgaaaccctgcgcaccttcgacccggaaaaccag
cgctccatcgacaaggtcgaatcggtcaagctgctgccggcccgtgagttcccgctacag
aaagacgcggtcacccgtttcaaggcacgctttcgcgagcgtttcgacgtcgacttccgt
cgctgcccgatctttcaggatctgagcagcggcatcactccggccggtatcgagtactac
ctgccgctgttcttcgacgaaacctcgaccctgttcgattacctgccgcaggacacccag
gtgttctctctgccgggcatcgagcaagcggcggaaaacttctggaacgacgtgcgcaat
cgttatgaagagcgtcgcgtcgacccttcgcgtcctttattgccgccggcagaattgttc
ctgccggtggaagactgtttcgcccgtttgaagagctggccacgtgtggtcgccagtcaa
caagacgtggaaaccggcgtcggccgcgagcgcttccccgcgcaagccctgccgaatctg
gcaatcgaggccaaagccacgcaaccgctggcggcactgtcggcatttctcgatgaattc
cccggacgcgtgctgttcaccgccgaatccgccggccgtcgcgaagtcctgctggagttg
cttgaacgcctgaagctgcgaccgaaaaccgtcgacagctggccggacttcgtcgcgagc
aaggatcgtctggcgatcaccattgccccgctcgatgaaggcctgatgctcgatgacccg
gcgctggccctggtcgcggaaagtccgctgttcggccaacgcgtgatgcaacgccgccgc
cgcgagaagcgtgccgacggcaataacgatgcggtgatcaaaaacctcaccgagctgcgc
gaaggcgcgccggtggtgcacattgatcatggtgtcggtcgctatctgggtctgacgatt
ctcgaaatcgacaatcaggccgccgaattcctcaccctcgaatacgccgagaacgccaag
ctttacgtgcccgtagctaacctgcatttgatcgcgcgttacaccggcagcgacgatgcg
ctggccccgctgcaccgcctcggctcggaaacctggcagaaggccaagcgtaaagccgcc
gaacaggtgcgcgatgttgccgctgaactgctcgacatctatgcccggcgtgccgctcgc
gaaggttatgcattcgccgacccgaaagccgattacgcgacgttcagcgccggtttcccg
ttcgaagaaaccccggaccagcaatcgaccattgaagccgtgcgcgaagacatgctcgcg
ccgaaaccaatggatcgcctggtctgcggcgacgtcggtttcggcaagaccgaagtggcc
atgcgtgcggcattcatcgccgtgcacggcggtcgtcaggtggcgattctggtgccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccagtg
accgtcgaagtgatgagccgcttcaagtcggccaaggaagtgaacgcggctatcgctgat
ctggccgaaggcaaaatcgacatcgtcattggcacgcacaagctgctgtccgacgatgtg
aaaatcaaaaacctcgggctggtgatcatcgacgaagaacaccgtttcggtgtgcgtcag
aaagaacagctcaaggccctgcgcagcgaagtcgacattcttaccctgaccgccacgccg
attccgcgcacactgaacatggcggtgtcgggcatgcgcgacttgtcgatcatcgccacg
ccgccagcgcgacgcctgtcggtgcgcactttcgtcatggagcagaacaagagcacggtc
aaagaggccctgctccgtgaactgctgcgcggcggccaggtttactacctgcacaacgat
gtgaaaaccatcgagaagtgcgccgccgatctcgccgaactggtgccggaagcccgcatc
ggcatcggtcacggacagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctat
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaataccatcatcatcgagcgcgccgacaagttcggcctggcacaactgcaccag
ttgcgtggtcgtgtcggccgcagtcaccaccaggcttacgcctacctgctgacgccgccg
cgccagcaaatcacttcggacgcggaaaagcgtctggaagcgattgccaatactcaggat
ctcggcgccggtttcgtgctcgcgaccaacgacttggaaatccgtggtgccggcgaactg
ctcggcgatggccagagcgggcagattcaggccgtgggcttcacgctgtacatggagatg
ctggaacgcgcggtgaaatcgatccgcaagggcgagcaaccgaaccttgatcaaccgctg
ggcggtggcccggaagtcaacttgcgggtgccggcgctgattccggaagactacctgccg
gacgttcacgcgcgtctgattctgtacaagcgcatcgcttcggccaccgacgaggaaggc
ctgaaagatctgcaagtcgagatgatcgaccgcttcggcctgctaccggaaccgacgaag
aatctggtgcgcatcacagcgctgaagttgcaggccgagcaattgggcatcaagaaggtc
gatggtggcccgcaaggtgggcgtattgagttcgccgcgcaaaccccggtcgacccgatg
acgctgataaagctgatccagagccagccaaaacgctataaattcgaaggcgcgacgatg
ttcaaattccaggtaccgatggaacgtccggaagagcgctttaatactgtagaggcgctg
tttgagcgcctcctcccgaaatctgtttga
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