Pseudomonas germanica: J0G10_21405
Help
Entry
J0G10_21405 CDS
T08191
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pgf
Pseudomonas germanica
Pathway
pgf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J0G10_21405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgf03019
]
J0G10_21405
03009 Ribosome biogenesis [BR:
pgf03009
]
J0G10_21405
Enzymes [BR:
pgf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J0G10_21405
Messenger RNA biogenesis [BR:
pgf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J0G10_21405
Ribosome biogenesis [BR:
pgf03009
]
Prokaryotic type
rRNA helicases
J0G10_21405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
QYY80275
LinkDB
All DBs
Position
complement(4856876..4858549)
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGELLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPMPLGEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggattcgccgcttttaatcttaacccgaatattcttgcagcc
gtcgcagcgactggctacgaagagccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggtcaggcgcaaaccggtaccggtaaaaccgccgcgttc
gcactgcctattctgcaccgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaactcgtgagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccgggcgttaccgttgtggccgtttacggcggcgcgcctatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagttctgtcgaccgtgaaccacctggttctcgacgaagctgacgaa
atgttgaaactgggcttcatggatgacctggaagtcatcttcaaggctctgccagcgacc
cgtcagaccgttttgttctcggcgaccctgccgcagtcgatccgcgccattgccgaacgc
cacctgcgcgatccgcaacacgtgaagatccagaccaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacttcggccgttctcagcttgctg
gaagtggaagatttcgacgctctgatcatgttcgtacgcaccaagcaagcgaccctggat
ctggccagcgccctcgacgccaaaggctacaaagccgcggcgctgaacggtgacatcgcc
cagaaccagcgtgagcgcgtcatcgactcgctgaaagatggccgtctggacatcgttgtc
gcgaccgacgtagctgctcgtggtctggacgttccgcgcatcactcacgtgttcaacgtt
gacatgccgtacgacccagagtcctacgttcaccgtatcggccgtactggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagtcgctgaagttcgcctgccggacgctcaagccgttctc
gatgcacgcatcaagaaactgaccaacagcctgtcgccactggtcgctgatgccgaatcg
acccacggtgagctgctcgatcgtctgactgcagacatcggctgcaccccgcgtgctctg
gctgctgcgctgctgcgcaaagccaccaacggtcaagcgctgaacctggctgccatcgag
aaggaacgtccactggtgccgaacaacgcaccgcgtggcgaccgtcctgagcgcaccggt
gatcgtcctgatcgtggtgaccgtgagcgtcgcgcgccaatgcctttgggcgaaggccgt
gctcgttgccgtaccgcgctgggtgcgcgtgacggtatcgctgcgaaaaacctgctgggc
gccatcctcaacgaaggcggtctggcccgtgaagcgatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgagctgccggaagatggtctggacaaactcctgaccaaactgaag
gacactcgcgttgccggtaagcagctgaaactgcgtcgctatcgcgaagattga
DBGET
integrated database retrieval system
