Pseudomonas germanica: J0G10_22265
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Entry
J0G10_22265 CDS
T08191
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pgf
Pseudomonas germanica
Pathway
pgf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J0G10_22265 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgf03019
]
J0G10_22265 (rne)
03009 Ribosome biogenesis [BR:
pgf03009
]
J0G10_22265 (rne)
Enzymes [BR:
pgf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
J0G10_22265 (rne)
Messenger RNA biogenesis [BR:
pgf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J0G10_22265 (rne)
Ribosome biogenesis [BR:
pgf03009
]
Prokaryotic type
rRNA processing factors
J0G10_22265 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QYY80439
LinkDB
All DBs
Position
5036632..5039871
Genome browser
AA seq
1079 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDSPEAATNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAPAAAAPAPVAAPEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPATERPARNEERRN
GRQQSRNRNGRRDEERKPREERAPREERAPREPREERAPREAREVREPREARTEAPVARE
ERAPRAPREERAPRAPREDRKPRGEREERVRELREPLDAVPAAAADVAVTAEERPTRQPR
EERAPRPPREERQPRAEQAAAAVAEEEVNTNEEQLPEDGSENAEGDRPRRRSRGQRRRSN
RRERQRDANGNVIEGSEESEAGENAEAPSTADLAAGLAVTAAVASTVISAPAEAQAHEQA
ERATAAVQETAPVEAPVVEATTPVEVVAAPEVEVAPVQETLPQVEPAPVVAAEPVVETVA
ETVTESVREVREEQTAFNWVAEPTVAETPAPVVEAPVVEAPVFETPVFEERKAAEPAPVV
EAPVVAAPVVTEAPAPVVEAAAPVSALTPSGRAPNDPREVRRRKREEERLQKEAELAAAA
APVAAEPAVVAEVVEAAPAPVTEEAVVESVIAEAPRSVQDAVEQHQEAEEKEHEPKPLV
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccgcatcactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctg
gccggtcgttacctcgtgctgatgccgaacaacccgcgtgccggcggtatctcccgtcgt
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggtctggtcgcaccagcc
gacatgggtctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgctcc
gcgccattcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatacgccaggtgatgccgcaatacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtcgtt
gaactgccttccggcggctccatcgttatcgatccgaccgaagccctggtgtcgatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgctctgcagaccaac
cttgaagctgccgaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgacccctgccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagccgaccgtgcccgcgtgcagatcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatccctgggcgaaagcagcggtatcgtt
tgcccgcgttgcaacggcaccggcatcatccgtgacgttgaatcgctgtcgctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtgcgcgcccaggtg
ccgatcccggtcgccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgctcgcatcatcattctgccgaacgaccacctcgaaaccccgcatttc
gaagttcagcgcctgcgtgacgacagcccggaagctgcgaccaaccagtccagctacgaa
atcgcagctgctgctgccgaagtcgaagaagtccagccagccgctgcgacccgcaccctg
gttcgccaggaagctgcggtcaagactgctccggcacgtgccaacgctccggttccgacc
gaagtcgccgccccggccgctgctgcaccagctccagtcgctgcaccagagccaagcctg
ttcaaaggtctggtgaaatcgctggtcagcctgttcgccaccaaagaagaaccagccgct
ccggttgtggttgaaaaaccagccaccgaacgtccggcccgcaacgaagagcgtcgcaac
ggtcgtcagcagagccgcaaccgtaatggtcgccgcgatgaagaacgcaagccacgcgaa
gaacgtgctccacgtgaagaacgtgcgccacgcgagccgcgcgaagagcgcgcgccacgt
gaagcccgtgaagtccgcgaaccacgtgaagctcgtaccgaagcgccagttgcccgcgaa
gaacgtgcaccacgcgctccgcgtgaagaacgtgcaccacgtgcgccgcgcgaagaccgc
aagccacgcggcgagcgtgaagagcgtgtgcgtgaactgcgcgagccactggacgccgtt
ccagccgctgctgctgacgttgccgttaccgctgaagaacgcccgacccgtcagccccgt
gaagaacgcgcaccgcgtccgccacgtgaagagcgtcaaccgcgtgccgaacaggccgct
gctgccgtcgctgaagaagaagtgaacaccaacgaagagcaactgccggaagacggttcg
gagaacgccgaaggcgatcgcccacgtcgtcgttcgcgcggtcagcgtcgtcgcagcaac
cgtcgtgagcgtcagcgtgatgccaacggcaacgtgatcgaaggttcggaagaatccgaa
gccggcgaaaacgctgaagcgccaagcactgccgatctggctgctggcctggctgtgacc
gccgctgttgccagcaccgtgatcagtgcaccggctgaagcacaagcccacgagcaagct
gaacgcgccaccgcggctgttcaggaaaccgctccagtggaagcgccggttgttgaagcg
actactccagtagaagtggttgctgctccggaagtcgaagtggcaccggttcaagagacc
ctgcctcaggtagagccagcgccagttgtggctgcggagccggtggtagaaaccgtcgca
gaaaccgtaaccgaaagcgtacgtgaagttcgcgaagagcagactgccttcaactgggtt
gccgagccgactgttgctgaaaccccagcgccagtggtggaagcaccggttgttgaagcg
ccagtgttcgaaaccccagtgtttgaagaacgtaaagctgccgaaccagcacctgtcgtt
gaagcaccggttgtcgcagcccccgtggtgaccgaagcgccagcccctgtggttgaagct
gcagcaccggtcagcgctctgacgccaagcggccgcgcgccaaacgacccacgtgaagtg
cgtcgtcgcaagcgtgaagaagagcgtctgcagaaggaagctgaactggctgccgctgct
gcgccagtcgctgccgagccagccgtggttgctgaagtggtcgaggcagcgcctgccccg
gtgactgaagaagctgtggttgagtcggtgattgctgaagcaccacgctccgttcaggac
gcggtcgagcagcaccaagaggccgaggaaaaagaacacgagcctaaaccactcgtgtaa
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