Pseudomonas germanica: J0G10_27760
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Entry
J0G10_27760 CDS
T08191
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pgf
Pseudomonas germanica
Pathway
pgf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J0G10_27760 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgf03021
]
J0G10_27760 (rpoC)
03400 DNA repair and recombination proteins [BR:
pgf03400
]
J0G10_27760 (rpoC)
Enzymes [BR:
pgf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J0G10_27760 (rpoC)
Transcription machinery [BR:
pgf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J0G10_27760 (rpoC)
DNA repair and recombination proteins [BR:
pgf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J0G10_27760 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
ApbA_C
DUF3150
Motif
Other DBs
NCBI-ProteinID:
QYY81464
UniProt:
A0ABX8YNB1
LinkDB
All DBs
Position
complement(6237047..6241246)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGNSVSGTRIVDTTVGRALLFQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKEIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLGGEDKFVSKYTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgctcatggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggtgtgatctgcgagaagtgcggcgttgaagttgcactggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccactcttgaaaaaggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggtgatgacttcgacgcccgcatg
ggtgctgaagctgtccgtgaactgttgcacgctatcgacctggaacacgagattggccgt
ctgcgtgaagaaattccgcaaaccaactccgaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtccactggtcccgctggatggcggtcgcttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtttgaag
cgcctgctggatctgtccgctccggacatcatcgtgcgcaacgaaaagcgcatgttgcag
gaagctgtcgatgctctgctcgacaacggtcgtcgtggccgcgctatcaccggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggctctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctcgcgaccaccatcaaagcagccaagaaaatg
gtcgagcgcgagctgccagaggtttgggacgttctcgctgaagtgattcgcgaacacccg
gttcttctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgcgccgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aaaggtgaaggtcgtgtatttgcggatctgcaggaagttgaccgtgtgttccgtgccggc
gaagccgcactgcacgccaaggttaaggttcgtatcaacgaaaccgtcaacgaccgtgac
ggcaacagcgtaagcggcacccgtatcgtcgacaccactgtcggccgtgcgctgctgttc
caggttgtgccaaaaggtctgtcgtacgacgtcgtcaacctgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggtttcgcttactcgaccatctccggcgtttccatcggt
gttaacgacttcgttatccctgacgagaaagcccgcatcatcggtgccgccaccgacgaa
gtgaaagagatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtgatcgacctttggtcgaaagcgaacgacgaagtttccaaggcaatgatggccaac
ctctcgaaagagaaggttatcgaccgtcacggcgttgaagtcgatcaagagtctttcaac
tcgatgtacatgatggccgactcgggtgcgcggggttccgcagcacagattcgtcagctg
gccggtatgcgtggtctgatggccaagccggacggttccatcatcgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctctactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaactgcgaactccggttacctgactcgtcgtctg
gtagacgtggcgcaggatctggttgtaaccgagatcgattgcggcaccgaacacggtctg
ctgatgactccgcacattgaaggcggtgacgttgtagagccgttgggtgagcgcgtattg
ggtcgtgttattgcccgtgacgtattcaagccaggtaccgaggacgttatcgttcctgcc
ggcactctggtagacgagaagtgggttgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagctgcgaaacccgctatggcatttgcgccaagtgctacggc
cgtgatctggctcgtggtcaccaggtaaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gctagccgtacttccgcagctgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cacaacctgaagcatgttgagcgagtggatggtcacctggttgctgtgtcccgttccggt
gagctggcgatcgctgatgacttcggtcgtgagcgtgagcgttacaagctgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccgatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgcgaaagatcgtccagctgcgggcaaagaaatccgtccagcagtgaagatg
gtcgacgacaacggcaaggatctgttgctgccaggcactgacgttatcgctcagtacttc
ctgccagccaacgccctggtcggtgtggctgacggtgcgaagattgcgatcggtgatgtt
atcgctcgtatcccgcaagaaacttcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagctcgtcgtccgaaagaagcgtcgattctggctgaggtcagc
ggcaccatcgcgttcggtaaagaaaccaaaggcaagcgccgtctggttattaccccgaac
gacggtagcgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtgttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggtccaagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggccaagtacatcgttaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgataagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaaatcgctgaatccggcgattcgagtttcatcaagggcgaccagatg
gaactgactcacgtactggtagaaaacgagcgtttgggcggcgaagacaagttcgtctcc
aagtacactcgcgttctgttgggtatcaccaaggcgtcgttgtccaccgaatcgttcatc
tcggcagcttccttccaggaaactacccgcgtactgaccgaagcggcagtcaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtagtcgtgggtcgtctgatcccggccggt
accggtctggcatatcacagcgagcgcaagcgtcgccgtgatgctgacaagccgttgcgc
gtaagcgccagtgaagtggaagctgcactgactgaagcgctgaactcgagcggtaactga
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integrated database retrieval system
